BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0369.p
         (216 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095922|ref|YP_001100997.1| hypothetical protein HEAR2759 [...   227   3e-61

>gi|134095922|ref|YP_001100997.1| hypothetical protein HEAR2759
           [Herminiimonas arsenicoxydans]
          Length = 206

 Score =  227 bits (579), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 127/205 (61%), Positives = 158/205 (77%), Gaps = 6/205 (2%)

Query: 12  SPTEQLRAEIAAAAARMIAEDGADYGSAKRKAAKQILGNQKVRGEIMPDNEQIEDEVRIY 71
           S TE LRAEIAAAAARMIAEDG DYG+AKRKAAKQILGN KVRG+++PDN  +EDEVR+Y
Sbjct: 7   SDTELLRAEIAAAAARMIAEDGVDYGTAKRKAAKQILGNNKVRGDVLPDNALLEDEVRLY 66

Query: 72  NELFFADTQPARLLHLRQVALQLMQDLQQFNPYITGAVWNGTAGEHSDIHLQLFSPSAKD 131
           N LFF DTQPARLLHLR +A++LM +L  F P++TGAV NGTAG HSDIHLQLF+ S K+
Sbjct: 67  NALFFGDTQPARLLHLRTLAVRLMAELAPFQPHLTGAVLNGTAGAHSDIHLQLFADSPKE 126

Query: 132 VEIFLLNKNVNFEVGETAHFR-TGHPVETLSFLLPQRGADPELAHLTLYEEDDLRGSLRA 190
           VEI+L+NK ++FEV E+AHF+     VETLSF+  Q G      HL LYE DDLRG+++ 
Sbjct: 127 VEIYLMNKRIDFEVSESAHFKGRNEAVETLSFMWQQEG-----VHLALYETDDLRGAVKK 181

Query: 191 APGKRAERGDATALASLIDASSEEQ 215
           +   R ER D  ++ +LI   +E++
Sbjct: 182 SASGRQERADIESVRALITEGNEQK 206


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.132    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 371,262
Number of extensions: 14247
Number of successful extensions: 39
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 1
Length of query: 216
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 138
Effective length of database: 743,337
Effective search space: 102580506
Effective search space used: 102580506
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)