BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0368.p
         (173 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095923|ref|YP_001100998.1| thioredoxin-related transmembra...   206   6e-55
gi|134093470|ref|YP_001098545.1| putative thioredoxin [Herminiim...    58   2e-10
gi|134095704|ref|YP_001100779.1| putative thiol:disulfide interc...    54   5e-09

>gi|134095923|ref|YP_001100998.1| thioredoxin-related transmembrane
           protein [Herminiimonas arsenicoxydans]
          Length = 173

 Score =  206 bits (524), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 92/171 (53%), Positives = 125/171 (73%), Gaps = 2/171 (1%)

Query: 5   KNIVLLAVVAVLCVGVGLYASQRLHPADSPQTLALNQLLSQSLPDVSGQPQALAQYRGKP 64
           +N+ +  + A++  G+G+Y   R H   +P++ A+    +Q L D  G+  AL+Q++GK 
Sbjct: 3   RNVFVFGIFALVFAGIGIYFGNRHHTPAAPESPAVATFFAQQLEDADGKTHALSQWQGKT 62

Query: 65  LIVNFWATWCGPCVEEMPELTALQQEIAP--VQILGIGVDSQENIAKFAQKYQIRYPLFA 122
           LIVNFWATWC PCVEEMPELTALQ E+AP  +QILG+G+D+  NI +FA KY+I YPL+ 
Sbjct: 63  LIVNFWATWCAPCVEEMPELTALQTELAPQGIQILGLGIDNPSNIREFAAKYKISYPLYI 122

Query: 123 AGTGATDLLRQFGNQAGGLPFTALVGKDGKVKKVYLGRLKFDELRADLSRL 173
           AG   T+L RQFGNQAGGLPFT ++G +G +KK YLGRLK ++LRAD+  L
Sbjct: 123 AGMTGTELSRQFGNQAGGLPFTVIIGPNGDIKKTYLGRLKMEQLRADIHSL 173


>gi|134093470|ref|YP_001098545.1| putative thioredoxin
           [Herminiimonas arsenicoxydans]
          Length = 174

 Score = 58.2 bits (139), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 79/173 (45%), Gaps = 20/173 (11%)

Query: 4   LKNIVLLAVVAVLCVGVGLYASQRLHPADSPQTLALNQLLSQSLPDVSGQPQALAQYRGK 63
           LK ++LL +VA+  VG    + +   P  +   L   ++ SQ L             RGK
Sbjct: 14  LKIVILLIIVALAVVGYLSVSKKEAIPEVTFVNLQGQKITSQDL-------------RGK 60

Query: 64  PLIVNFWATWCGPCVEEMPEL--TALQQEIAPVQILGIGV--DSQENIAKFAQKYQIRYP 119
            +++NFWAT C  CV+EMPE+  T  +     ++ + + +  D    +  F +  ++  P
Sbjct: 61  VVMINFWATSCTTCVKEMPEMVETFNKYNAHGLEFIAVAMAYDPPNYVLNFVETRKL--P 118

Query: 120 LFAAGTGATDLLRQFGNQAGGLPFTALVGKDGKVKKVYLGRLKFDELRADLSR 172
              A     +L + FGN     P T ++ K+G V K Y+G   F  L   L +
Sbjct: 119 FTVALDTQGELAKSFGN-IQLTPTTLVIDKNGHVIKKYVGEPDFAALHQLLEK 170


>gi|134095704|ref|YP_001100779.1| putative thiol:disulfide
           interchange protein [Herminiimonas arsenicoxydans]
          Length = 220

 Score = 53.5 bits (127), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 6/129 (4%)

Query: 47  LPDVSGQPQALAQYRGKPLIVNFWATWCGPCVEEMPELTALQQEIAPVQILGIGV-DSQE 105
           L  ++G    LA++ GKP ++N WATWC PC  EMP     QQ+   +  + I   +S+ 
Sbjct: 94  LQSMNGDEVYLARFDGKPTVINLWATWCPPCQREMPVFAKAQQQNPGIHFVFINQGESRL 153

Query: 106 NIAKFAQKYQIRY-PLFAAGTGATDLLRQFGNQAGGLPFTALVGKDGKVKKVYLGRLKFD 164
            + +F  K ++    +    +GA    + F  +  G+P T     +GK+    LG +   
Sbjct: 154 LVEQFLTKNKLTMQNVLIDASGAAG--KAF--EVKGMPSTYFFDANGKLLDSRLGEVSDA 209

Query: 165 ELRADLSRL 173
            L   L ++
Sbjct: 210 SLMEKLQKI 218


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.138    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 309,115
Number of extensions: 12731
Number of successful extensions: 50
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 3
Length of query: 173
Length of database: 1,000,347
Length adjustment: 76
Effective length of query: 97
Effective length of database: 749,927
Effective search space: 72742919
Effective search space used: 72742919
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)