BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0365.p
         (459 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095926|ref|YP_001101001.1| acetyl CoA carboxylase, biotin ...   840   0.0  

>gi|134095926|ref|YP_001101001.1| acetyl CoA carboxylase, biotin
           carboxylase subunit [Herminiimonas arsenicoxydans]
          Length = 456

 Score =  840 bits (2170), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/448 (90%), Positives = 433/448 (96%)

Query: 1   MFEKILIANRGEIALRIQRACRELGIKTVVVHSEADREAKYVKLADESVCIGPAPSPLSY 60
           MFEKILIANRGEIALRIQRACRE+GIKTVVVHSEADR+AKYVKLADESVCIGPAPS LSY
Sbjct: 1   MFEKILIANRGEIALRIQRACREMGIKTVVVHSEADRDAKYVKLADESVCIGPAPSTLSY 60

Query: 61  LNMPAIISAAEVTDAQAIHPGYGFLSENADFAERVEQSGFVFIGPRAENIRMMGDKVSAK 120
           LNMPAIISAAEVTDA+AIHPGYGFLSENADFAERVEQSGFVFIGPR+E+IRMMGDKV+AK
Sbjct: 61  LNMPAIISAAEVTDAEAIHPGYGFLSENADFAERVEQSGFVFIGPRSESIRMMGDKVTAK 120

Query: 121 QAMIRAGVPCVPGSEGALPDNPKEIVQIARKIGYPVIIKAAGGGGGRGMRVVHTEAALIN 180
           Q MI+AGVPCVPGS+GALPD+PKEI+Q ARK+GYPVIIKAAGGGGGRGMRVVHTEAAL+N
Sbjct: 121 QTMIKAGVPCVPGSDGALPDDPKEIIQTARKVGYPVIIKAAGGGGGRGMRVVHTEAALLN 180

Query: 181 AVTMTKTEAGAAFGNPEVYMEKYLENPRHVEIQILADEHKQAIWLGERDCSMQRRHQKVI 240
           AVTMTKTEAG+AFGNPEVYMEKYLENPRHVEIQILADEHK AIWLGERDCSMQRRHQKV+
Sbjct: 181 AVTMTKTEAGSAFGNPEVYMEKYLENPRHVEIQILADEHKNAIWLGERDCSMQRRHQKVL 240

Query: 241 EEAPAPGIPRKIIEKIGERCAEACRKMNYRGAGTFEFLYENEEFYFIEMNTRVQVEHPVT 300
           EEAPAPGIPRK IE+IG+RCAEACRKM YRGAGTFEFLYEN EFYFIEMNTRVQVEHPVT
Sbjct: 241 EEAPAPGIPRKTIERIGDRCAEACRKMGYRGAGTFEFLYENGEFYFIEMNTRVQVEHPVT 300

Query: 301 EMITGVDIVQEQIRIAAGEKLRYRQRDIELKGHAIECRINAEDPFKFIPSPGRITAWHVP 360
           EMITG+DIVQEQIRIAAGEKLRYRQRDI L GHAIECRINAEDPFKF PSPG+I +WH P
Sbjct: 301 EMITGIDIVQEQIRIAAGEKLRYRQRDIVLNGHAIECRINAEDPFKFTPSPGKIVSWHAP 360

Query: 361 GGPGIRVDSHAYSGYFVPPNYDSMVGKVIAYGSTREQAIRRMQIALSEMVVEGISTNIPL 420
           GGPGIRVDSHAY+GY+VPP+YDSMVGKVI+YG+TREQAI+RMQIALSEMVVEGISTNIPL
Sbjct: 361 GGPGIRVDSHAYAGYYVPPHYDSMVGKVISYGATREQAIKRMQIALSEMVVEGISTNIPL 420

Query: 421 HRELMVDARFFEGGTNIHYLEHKLSERP 448
           HRELMVDARF EGGTNIHYLE KL+ +P
Sbjct: 421 HRELMVDARFIEGGTNIHYLEQKLANKP 448


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 819,815
Number of extensions: 31595
Number of successful extensions: 107
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 1,000,347
Length adjustment: 85
Effective length of query: 374
Effective length of database: 720,272
Effective search space: 269381728
Effective search space used: 269381728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)