BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0364.p
         (304 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095927|ref|YP_001101002.1| ribosomal protein L11 methyltra...   432   e-123

>gi|134095927|ref|YP_001101002.1| ribosomal protein L11
           methyltransferase [Herminiimonas arsenicoxydans]
          Length = 309

 Score =  432 bits (1111), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 221/304 (72%), Positives = 248/304 (81%), Gaps = 3/304 (0%)

Query: 1   MAWVEIVIEVAREEAEALSDALMDSGALSVSVEDADEGTEAERPLFGEPGMEPEEAAWDR 60
           M+W EIVIEVAR  AEALSDAL D+GALSVSVEDAD GT+AE+PLFGEPGMEP EAAW+R
Sbjct: 1   MSWTEIVIEVARTHAEALSDALFDAGALSVSVEDADFGTDAEQPLFGEPGMEPTEAAWER 60

Query: 61  SRVVALAGKDADHAAIVMDAAKAIGLDYA-LPFATRNVEEQDWVRLTQSQFEPIHIGQRI 119
           SRVVAL   +AD AAIV +AA++IGL  A L F  RNV++QDWVRLTQSQFEPIHIG+ I
Sbjct: 61  SRVVALTPVEADQAAIVAEAAESIGLAAADLAFTLRNVDDQDWVRLTQSQFEPIHIGKNI 120

Query: 120 WVVPSWHEAPADPDALVLELDPGLAFGTGSHPTTRLCMEWLEANATQAQTLLDYGCGSGI 179
           WVVPSWH+ P DP ALVLELDPGLAFGTGSHPTTRLCMEWLEA+A    ++LDYGCGSGI
Sbjct: 121 WVVPSWHDVP-DPAALVLELDPGLAFGTGSHPTTRLCMEWLEAHAPIGLSVLDYGCGSGI 179

Query: 180 LALVAAKIGVPQVIGVDIDPQALESAQHNTERNHCTATYYLPEAFAQAHPEGERFNVVVA 239
           LA++A K+    V+G+DIDPQA++SA  NTERNHC   YYLP+ FA A      F+VVVA
Sbjct: 180 LAMIAKKLDADTVVGIDIDPQAIQSAVFNTERNHCDVAYYLPDEFA-ASGHAHTFDVVVA 238

Query: 240 NILAGPLQLMAPMLAGRVRAGGALVLSGVLDRQAQEVIATYAPYIALTVWAEHEGWVALA 299
           NILA PL+LMAPMLAGRV  GG LVLSGVL  Q  EV A YAP+IALTVWAE EGWVALA
Sbjct: 239 NILANPLKLMAPMLAGRVNPGGQLVLSGVLATQVDEVTAAYAPFIALTVWAEQEGWVALA 298

Query: 300 GHLP 303
           G  P
Sbjct: 299 GRSP 302


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.133    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 623,346
Number of extensions: 26883
Number of successful extensions: 106
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 223
Effective length of database: 733,452
Effective search space: 163559796
Effective search space used: 163559796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)