BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0363.p
         (422 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095928|ref|YP_001101003.1| putative transmembrane protein ...   148   5e-37

>gi|134095928|ref|YP_001101003.1| putative transmembrane protein
           [Herminiimonas arsenicoxydans]
          Length = 400

 Score =  148 bits (373), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 71/175 (40%), Positives = 108/175 (61%), Gaps = 5/175 (2%)

Query: 250 PGFVRRAQRKARISHMTKMVMMVLAGAMVPVL--LLQSLYYWRNPLAAAVPQLRPMLNGM 307
           P F++RA+RK ++    K+  ++  G ++  L  L Q  Y +RN +A   PQ +P+L  +
Sbjct: 229 PAFLKRARRKQKLG--GKLRTLLGMGCLILFLAALAQGTYLFRNQIAGQFPQTKPLLTQL 286

Query: 308 CVSLHCTVGLPTEIERLSLEANELQVVPPSQNVYALTVVMRNRSSTTQAWPDIELTLNND 367
           C    C + LP +I  +S+E++ELQ +  +++ + LT ++RN S + Q WP IELTLN+ 
Sbjct: 287 CDVFACRIDLPAQIAAVSIESSELQTLAENKDTFVLTTLLRNYSESLQTWPHIELTLNDA 346

Query: 368 DEKAVVRRVFRPRDYLADPTQADNGIGPESEQQIKLNFELKDALVSGYRVYLFYP 422
           +EK ++RRVF P DYL+   +   G    SE  +KL+FEL     SGYRVYLFYP
Sbjct: 347 NEKPLLRRVFAPADYLS-AAEVRAGFAASSEHAVKLSFELAQIKASGYRVYLFYP 400


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.315    0.131    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 567,829
Number of extensions: 17505
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 338
Effective length of database: 723,567
Effective search space: 244565646
Effective search space used: 244565646
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)