BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0360.p
         (183 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095930|ref|YP_001101005.1| hypothetical protein HEAR2767 [...   204   2e-54

>gi|134095930|ref|YP_001101005.1| hypothetical protein HEAR2767
           [Herminiimonas arsenicoxydans]
          Length = 180

 Score =  204 bits (520), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 107/172 (62%), Positives = 134/172 (77%), Gaps = 3/172 (1%)

Query: 8   SIFTMIVNAVASILAGVMLLRFWMQVVRVRPPQSVGQFVYQLSDWLVRPLRRVMPG-GSY 66
           SIFT+I++ VA +LAG +LLRFWMQ VRVRPP  + QF YQL+DWLVRPLRRV+PG G Y
Sbjct: 4   SIFTLIIDTVAIVLAGALLLRFWMQAVRVRPPMEIAQFTYQLTDWLVRPLRRVLPGAGGY 63

Query: 67  DWASLVAAFLIVLLSIIAILGWQSG-FDFRLIFIVALERFFEWICYGFMATLIIEAVFSW 125
           DWASL+ AFL+ L++  A   W  G F  + + ++AL R  +W  YG +  ++IE VFSW
Sbjct: 64  DWASLIGAFLVALIAT-AFAVWLRGVFSPQAVLLLALLRVCQWALYGLIGLILIEVVFSW 122

Query: 126 VNPHAPLAPFVRALNDPLLRPLRRIIPPLGGVDLSPLVLLILLQIAVRVVSG 177
           VNP APLAPFVRALNDPL+RPLRRI+P LG +DLSPLV LILLQIA+++V+ 
Sbjct: 123 VNPRAPLAPFVRALNDPLMRPLRRIVPLLGAIDLSPLVALILLQIAIQLVTA 174


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.335    0.148    0.474 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 296,801
Number of extensions: 10848
Number of successful extensions: 65
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 1,000,347
Length adjustment: 76
Effective length of query: 107
Effective length of database: 749,927
Effective search space: 80242189
Effective search space used: 80242189
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 126 (53.1 bits)