BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0358.p
         (388 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095932|ref|YP_001101007.1| ribonucleotide-diphosphate redu...   702   0.0  

>gi|134095932|ref|YP_001101007.1| ribonucleotide-diphosphate
           reductase subunit beta [Herminiimonas arsenicoxydans]
          Length = 395

 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/400 (84%), Positives = 357/400 (89%), Gaps = 17/400 (4%)

Query: 1   MLSWDDEVKQPAQAPRTPNLQPQLQPAFGQA-----------NAALNPALMAGN-GEQVD 48
           MLSWD+E K     P  P  QP LQPA  Q            + AL+PA+MAG     VD
Sbjct: 1   MLSWDEEAK-----PAAPQAQPTLQPALQQVRDAAAQRVQAQDVALDPAVMAGKPAATVD 55

Query: 49  TTRRVNAADKRIINGHTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKNPN 108
            TRR++AADKRIING TDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKNPN
Sbjct: 56  PTRRMDAADKRIINGKTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKNPN 115

Query: 109 GLTEDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQ 168
           GLT+DERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQ
Sbjct: 116 GLTDDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQ 175

Query: 169 YIVESLGLDEAEIFNAYHEVASIRDKDEFLIPFIDTLTDPEFKTGTMENDQKLLKSLIVF 228
           YIVESLGLDE EIFNAY+E+ SIRDKD+FLIPFID LTDP F TGT ENDQ LL+SLIVF
Sbjct: 176 YIVESLGLDEGEIFNAYNEIESIRDKDQFLIPFIDVLTDPNFTTGTTENDQTLLRSLIVF 235

Query: 229 ACIMEGLFFYVGFTQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINTVKMENPHL 288
           AC+MEGLFFYVGF QILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINT+K+ENPHL
Sbjct: 236 ACLMEGLFFYVGFAQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINTIKLENPHL 295

Query: 289 WTPEFREEIKSLFLRAVELEYRYAEDTMPRGVLGLNAPMFKSYLRFIANRRAQQIGLDPL 348
           WTP+FR+EIK+LFLRAVELEYRYAEDTMPRGVLGLNAPMFK YLRFIANRRAQQIGL+P+
Sbjct: 296 WTPQFRDEIKALFLRAVELEYRYAEDTMPRGVLGLNAPMFKGYLRFIANRRAQQIGLEPM 355

Query: 349 FAQEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 388
           F QEENPFPWMSEMIDLKKERNFFETRVIEYQTGGAL+WE
Sbjct: 356 FEQEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALNWE 395


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.137    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 746,308
Number of extensions: 30099
Number of successful extensions: 76
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 305
Effective length of database: 726,862
Effective search space: 221692910
Effective search space used: 221692910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)