BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0357.p
         (993 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095933|ref|YP_001101008.1| ribonucleotide-diphosphate redu...  1724   0.0  

>gi|134095933|ref|YP_001101008.1| ribonucleotide-diphosphate
           reductase subunit alpha [Herminiimonas arsenicoxydans]
          Length = 966

 Score = 1724 bits (4465), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 833/992 (83%), Positives = 888/992 (89%), Gaps = 29/992 (2%)

Query: 3   STQEISVKSPAPFGVSAEQEGSAEGQSIVSHTAGLGEYRIIRRNGAVVGFEPSKISIAVT 62
           STQE S +SP      A    +A   S+  ++A LG+YRI+RRNGAVVGFEPSKISIAVT
Sbjct: 3   STQETSGQSPTEISNIAPLAVAASTPSV--NSAALGDYRILRRNGAVVGFEPSKISIAVT 60

Query: 63  KAFLAVNGGQGAASARVREMVEQLTTSVVSALVRRQPTGGTFHIEDIQDQVELALMRSGE 122
           KAFLAVNGGQGAASARVRE+VEQLTT+VV+AL+RRQP GGTFHIEDIQDQVELALMRSGE
Sbjct: 61  KAFLAVNGGQGAASARVRELVEQLTTNVVNALMRRQPAGGTFHIEDIQDQVELALMRSGE 120

Query: 123 HDVARAYVLYRAKRMEERAQQGAATKTEVAAPQLHVTEDGQSRPLDINEVRALIAAACVG 182
           HDVARAYVLYR KRMEERAQQ AA        QLHVTE+GQ RPLD+N+VR LI AAC+G
Sbjct: 121 HDVARAYVLYRFKRMEERAQQQAAKPVVETEHQLHVTENGQRRPLDMNQVRDLITAACIG 180

Query: 183 LEAHVDAEAILAETVKNLYDGVPVEELYKSAILAARALMEKDPAYSQVTSRLLMHTIRKE 242
           LE HVDA+AIL ETVKNLYDGVPVEEL+KSAILAARALMEKDPAYS VT+RLLMHTIRKE
Sbjct: 181 LEKHVDADAILRETVKNLYDGVPVEELHKSAILAARALMEKDPAYSTVTARLLMHTIRKE 240

Query: 243 VFGKEVAQADAPAEYLDYFPHYVKKGIEAELLDTKLAQFDLAKLAAALKPERDLQFGYIG 302
           VFG+EVAQA+APAEYL YF  ++KKGI AELLD KL +FDL KLA ALKPERDLQFGY+G
Sbjct: 241 VFGREVAQANAPAEYLVYFAEFIKKGIAAELLDAKLGEFDLKKLADALKPERDLQFGYLG 300

Query: 303 LQTLYDRYFLHIGGTRIEMPQAFYMRVAMGLALNEIDREARAIEFYDLLSSFDFMSSTPT 362
           LQTLYDRYFLHI   RIEMPQAFYMRVAMGLALNE +RE RAIEFY+LLSSFDFMSSTPT
Sbjct: 301 LQTLYDRYFLHIADQRIEMPQAFYMRVAMGLALNEANREERAIEFYNLLSSFDFMSSTPT 360

Query: 363 LFNSGTQRSQLSSCYLTTVADDLDGIYEAIKENALLAKFAGGLGNDWTPVRALGAHIKGT 422
           LFNSGTQRSQLSSCYLTTVADDL GIY+AIKENALLAK+AGGLGNDWTPVR+LGAHIKGT
Sbjct: 361 LFNSGTQRSQLSSCYLTTVADDLGGIYDAIKENALLAKYAGGLGNDWTPVRSLGAHIKGT 420

Query: 423 NGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFLELRKNTGDDRRRTH 482
           NG+SQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFL+LRKNTGDDRRRTH
Sbjct: 421 NGRSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFLDLRKNTGDDRRRTH 480

Query: 483 DMNTANWIPDLFMKRVMEKGEWTLFSPSDTPDLHDKFGRAFEEAYTAYEAKAARGELKLF 542
           DMNTANWIPDLFMKRVMEKGEWTLFSPSD PDLHDK G+AFEEAYT YEAKAARGELKLF
Sbjct: 481 DMNTANWIPDLFMKRVMEKGEWTLFSPSDAPDLHDKVGKAFEEAYTGYEAKAARGELKLF 540

Query: 543 KKVQANDLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNESEI 602
           KK+QA DLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNESEI
Sbjct: 541 KKIQALDLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNESEI 600

Query: 603 AVCNLGSVNLPAHLVNGELDHAKLQKTIRTAMRMLDNVIDINYYAVKKARDSNLRHRPVG 662
           AVCNLGSVN+PAH+ +G+LDH KLQKTIRTAMRMLDNVIDINYYAV KARDSNLRHRPVG
Sbjct: 601 AVCNLGSVNMPAHMKDGKLDHVKLQKTIRTAMRMLDNVIDINYYAVNKARDSNLRHRPVG 660

Query: 663 MGIMGFQDCLHIKRVPYASMDAVEFADRSMEAVCYYAYMASTELAEERGRYASYRGSLWD 722
           MGIMGFQDCLH+ R+PYAS DAV+FAD SMEAVCYYAY ASTELAEERGRY+SY+GSLWD
Sbjct: 661 MGIMGFQDCLHMMRIPYASNDAVQFADNSMEAVCYYAYYASTELAEERGRYSSYKGSLWD 720

Query: 723 RGILPQDSLKLLAQERGG-YLETDTTETLDWAALRARIAEHGMRNSNCVAIAPTATISNI 781
           RGILPQDSLKLLA ERG  YLE D +ET DW  LRARI E GMRNSNCVAIAPTATISNI
Sbjct: 721 RGILPQDSLKLLADERGAKYLEADYSETFDWTPLRARIKEFGMRNSNCVAIAPTATISNI 780

Query: 782 IGVSACIEPTYQNLYVKSNLSGEFTEINEYLVRDLKARGLWDEVMVADLKYFDGSLAKID 841
           IGVSACIEPTYQNLYVKSNLSGEFTEINEYLVRDLKARGLWDEVM++DLKYFDGSLAKID
Sbjct: 781 IGVSACIEPTYQNLYVKSNLSGEFTEINEYLVRDLKARGLWDEVMISDLKYFDGSLAKID 840

Query: 842 RIPQDLRDIYATAFEVDPSWLVEAASRRQKWIDQAQSLNIYMAGASGKRLDETYKLAWLR 901
           RIPQDLRDIYATAFEV+PSWLVEAASRRQKWIDQAQSLNIYM+GASGK+LD+TYKLAWLR
Sbjct: 841 RIPQDLRDIYATAFEVEPSWLVEAASRRQKWIDQAQSLNIYMSGASGKKLDDTYKLAWLR 900

Query: 902 GLKTTYYLRTIGATHTEKSTSRAGALNAVAVDGGAGAMASASGTAVPAAPIASAAASAAY 961
           GLKTTYYLRT+GATHTEKSTS+ GALN  AVD G G+              ++AA SAA 
Sbjct: 901 GLKTTYYLRTMGATHTEKSTSKTGALN--AVDSGGGS--------------STAAQSAA- 943

Query: 962 VMPNPGASIEADGPVCTMRPGDPGFEECEACQ 993
                    E DGP C +RPGD GFEECEACQ
Sbjct: 944 ---------ETDGPACILRPGDAGFEECEACQ 966


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.132    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,772,655
Number of extensions: 70235
Number of successful extensions: 189
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 1
Length of query: 993
Length of database: 1,000,347
Length adjustment: 91
Effective length of query: 902
Effective length of database: 700,502
Effective search space: 631852804
Effective search space used: 631852804
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)