BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0356.p
         (207 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095934|ref|YP_001101009.1| N-acetyl-anhydromuranmyl-L-alan...   219   8e-59

>gi|134095934|ref|YP_001101009.1| N-acetyl-anhydromuranmyl-L-alanine
           amidase [Herminiimonas arsenicoxydans]
          Length = 185

 Score =  219 bits (558), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 105/144 (72%), Positives = 117/144 (81%)

Query: 41  LLVIHNISLPPGQFGGPYIADLFCNRLDYDAHPYFDQLRPLRVSAHFLIRRDGEVVQFVP 100
           LLVIHNISLPP QFGGP+IADLF N+LDY A PYF+QL+ LRVSAHFLIRRDG V+QFV 
Sbjct: 5   LLVIHNISLPPEQFGGPFIADLFLNQLDYAADPYFEQLKLLRVSAHFLIRRDGNVMQFVS 64

Query: 101 AHRRAWHAGVSTFEGRERCNDFSIGIELEGTDFEPFAQAQYAALVKLSQALVSRYGLTAV 160
           A  RAWHAG S+F G+ERCNDFSIGIELEGTDF+PF +AQY AL  L+ AL   Y L  V
Sbjct: 65  ARDRAWHAGASSFCGQERCNDFSIGIELEGTDFQPFEEAQYIALASLTVALKQAYPLRHV 124

Query: 161 AGHEHIAPVRKTDPGPFFDWAGYH 184
           +GHE IAP RKTDPGPFF+W  Y 
Sbjct: 125 SGHEQIAPGRKTDPGPFFNWTEYQ 148


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.324    0.141    0.459 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 450,600
Number of extensions: 18768
Number of successful extensions: 47
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 1
Length of query: 207
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 129
Effective length of database: 743,337
Effective search space: 95890473
Effective search space used: 95890473
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 126 (53.1 bits)