BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0354.p
         (270 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095938|ref|YP_001101013.1| hypothetical protein HEAR2775 [...   372   e-104
gi|134096287|ref|YP_001101362.1| putative transmembrane cytochro...    62   3e-11

>gi|134095938|ref|YP_001101013.1| hypothetical protein HEAR2775
           [Herminiimonas arsenicoxydans]
          Length = 269

 Score =  372 bits (955), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 198/267 (74%), Positives = 225/267 (84%), Gaps = 1/267 (0%)

Query: 1   MQTYFFILAALFYLGCAFMPSQRRAPISLGIVVGWVLHGGALLSDMFAPDALRVGFAVML 60
           M TY F+LAA  Y  CA +PS+ R  ISLG + GW+LHGGAL  D+    +LR+GFA+ML
Sbjct: 1   MYTYLFVLAAFCYAVCACLPSKNRMAISLGTLFGWLLHGGALWVDVVTSGSLRMGFAIML 60

Query: 61  SSTLWISVAAYWLENRNFSLDSMRVLVLPVAALAVILPTVFPGNLVALAGKSDWFLAHIA 120
           S+TLWISVAAYWLENRNFSLD +R+LVLP AA++V+LPTVFPGNL+ L GKS  F  HIA
Sbjct: 61  SATLWISVAAYWLENRNFSLDGLRILVLPCAAVSVLLPTVFPGNLIPLDGKSALFPWHIA 120

Query: 121 ISILAYSTLTIAAFHAVLMVLQESRLHTRPGPVAQSSWFGLALDRLPALLTMEKLLFRLI 180
           I++LAYSTLTIAAFHAVLM LQES+LHTR     ++ WF LALDRLPALLTMEKLLFRLI
Sbjct: 121 IAMLAYSTLTIAAFHAVLMALQESKLHTRQ-SAQKAGWFALALDRLPALLTMEKLLFRLI 179

Query: 181 AFGFTLLTLTVLSGVVFSEQLFGTPLKWDHKTIFTMLSWLLFGLLLAGRRWQGWRGRTAL 240
            FGF LLTLTVLSGVVFSE+LFG   KW+HKTIFTMLSWLLFG+LLAGR+W+GWRG+TAL
Sbjct: 180 GFGFFLLTLTVLSGVVFSEELFGKAFKWEHKTIFTMLSWLLFGILLAGRKWRGWRGKTAL 239

Query: 241 SFTLAGFAILLLAYVGSRFVLEVVLHR 267
           SFTL GF  LLLAYVGSRFVLEVVLHR
Sbjct: 240 SFTLTGFTTLLLAYVGSRFVLEVVLHR 266


>gi|134096287|ref|YP_001101362.1| putative transmembrane cytochrome
           C-type biogenesis transmembrane protein [Herminiimonas
           arsenicoxydans]
          Length = 383

 Score = 62.0 bits (149), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 15/152 (9%)

Query: 111 KSDWFLAHIAISILAYSTLTIAAFHAVLMVLQESRLHTRPGPVAQSSWFGLALDRLPALL 170
           +S W   H+  + + Y T ++AA  AV  +L+                 G+  DRLPAL 
Sbjct: 239 QSWWMKIHVPANFIGYGTFSLAAMVAVAYLLKSH---------------GILGDRLPALE 283

Query: 171 TMEKLLFRLIAFGFTLLTLTVLSGVVFSEQLFGTPLKWDHKTIFTMLSWLLFGLLLAGRR 230
            ++ ++++ IA GF   T+  + G +++ + +G    WD K  + ++ WL +   L  R 
Sbjct: 284 VLDDVMYKAIAVGFAFFTIATILGALWAAEAWGGYWSWDPKETWALIVWLNYASWLHMRL 343

Query: 231 WQGWRGRTALSFTLAGFAILLLAYVGSRFVLE 262
            +G RG+ A  + + G  +   A++G    L 
Sbjct: 344 MKGLRGKVAAWWAVIGLLVTTFAFLGVNMFLS 375


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.332    0.142    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 441,601
Number of extensions: 14660
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 2
Length of query: 270
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 190
Effective length of database: 736,747
Effective search space: 139981930
Effective search space used: 139981930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 128 (53.9 bits)