BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0353.p (269 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096488|ref|YP_001101563.1| putative Sulfate-transporting A... 198 2e-52 gi|134094842|ref|YP_001099917.1| ABC transporter ATP-binding pro... 197 4e-52 gi|134093702|ref|YP_001098777.1| nitrate ABC transporter ATP-bin... 193 6e-51 gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 175 2e-45 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 175 2e-45 >gi|134096488|ref|YP_001101563.1| putative Sulfate-transporting ATPase [Herminiimonas arsenicoxydans] Length = 262 Score = 198 bits (504), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 104/249 (41%), Positives = 156/249 (62%), Gaps = 5/249 (2%) Query: 8 PRICIQSVHKVFKTDEREVVALKDINLAIPDGQFVCLLGPSGCGKSTLLNAIAGFALPSS 67 P + ++ V +KT E V A ++ + LLGPSGCGKSTLL A+ G+ +P+ Sbjct: 7 PLLDVRGVTLQYKTKEHLVTATYRVDFKVYKSDRFVLLGPSGCGKSTLLKAVGGYMMPTE 66 Query: 68 GQILTDGKAVTEPGPDRGMVFQEY-ALFPWMTVEQNVAFGLEIKGRPKAEIAQ-RVSQLL 125 G++ K +T+P DR MVFQE+ L PW TV+QNV F L G+ K + A+ + + Sbjct: 67 GEMRLHDKVITKPWYDRMMVFQEFDQLPPWKTVKQNVMFPLLASGKLKGKEAEDKAMYYI 126 Query: 126 DKLGLIDFRTRFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQDELLR 185 +K+ L F +P LSGGM+QRVAIAR +A++ I+LMDEP+ ALDALTR+ +QDELL+ Sbjct: 127 EKVNLSKFADHYPHMLSGGMKQRVAIARGMAMEPDILLMDEPYAALDALTRKKMQDELLQ 186 Query: 186 IWDEFRKTIVFVTHSIEEAIYLADRIVVMTYRPGTVKRDMLVNLPRLRDPADPDFNALKR 245 +WD+ T++FVTHSI EA+ + +RI++++ PG V ++ D D D N L Sbjct: 187 LWDDTHFTVLFVTHSIAEAVKIGNRILLLSPHPGQVTAELNST---GEDTIDADGNCLTE 243 Query: 246 ELGQLVMEE 254 ++ +++ E Sbjct: 244 KINKMLFAE 252 >gi|134094842|ref|YP_001099917.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 434 Score = 197 bits (501), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 108/256 (42%), Positives = 153/256 (59%), Gaps = 4/256 (1%) Query: 10 ICIQSVHKVFKT-DEREVVALKDINLAIPDGQFVCLLGPSGCGKSTLLNAIAGFALPSSG 68 I ++ V K FKT D L+++N A+ +G+ V LLG SG GKSTLL +AG G Sbjct: 7 IELKGVAKSFKTADGTPCSVLENVNFALAEGEIVALLGKSGSGKSTLLRIMAGLIAADQG 66 Query: 69 QILTDGKAVTEPGPDRGMVFQEYALFPWMTVEQNVAFGLEIKGRPKAEIAQRVSQLLDKL 128 G+ + P MVFQ +ALFPW+TV+QNV GLE +G E +R +LD + Sbjct: 67 TAKYRGQEIYSPVSGIAMVFQSFALFPWLTVQQNVELGLEAQGMAPDEREKRADAMLDLI 126 Query: 129 GLIDFRTRFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQDELLRIWD 188 GL F P++LSGGM+QRV IAR L ++LMDE F ALD LT L+D++L +W+ Sbjct: 127 GLAGFGGALPRELSGGMKQRVGIARGLVTGPDVLLMDEAFSALDVLTGETLRDDILEMWE 186 Query: 189 EFR---KTIVFVTHSIEEAIYLADRIVVMTYRPGTVKRDMLVNLPRLRDPADPDFNALKR 245 E R K I+ V+H+IEEA+ +ADRI+V++ PG ++ ++ +NLPR R+ + AL Sbjct: 187 EKRIPTKGILIVSHNIEEAVMMADRILVLSSSPGRIRSEIRINLPRPRNVDSVEIRALID 246 Query: 246 ELGQLVMEEQQRHHNA 261 E+ L+ Q A Sbjct: 247 EVYALMTMRTQPETTA 262 >gi|134093702|ref|YP_001098777.1| nitrate ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 271 Score = 193 bits (491), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 97/220 (44%), Positives = 137/220 (62%), Gaps = 3/220 (1%) Query: 10 ICIQSVHKVFKTDEREVVALKDINLAIPDGQFVCLLGPSGCGKSTLLNAIAGFALPSSGQ 69 I IQ F T + AL DINL + G+F+ L+G SGCGKSTLLN IAG + G Sbjct: 9 IDIQHAEMSFHTKKGVFNALTDINLTVAKGEFITLIGHSGCGKSTLLNLIAGLTQSTGGM 68 Query: 70 ILTDGKAVTEPGPDRGMVFQEYALFPWMTVEQNVAFGLEI---KGRPKAEIAQRVSQLLD 126 +L + + P P+R +VFQ ++L PW+T +NV +E K KA++ R L Sbjct: 69 LLCGNREIAGPSPERAVVFQNHSLLPWLTCYENVYLAVERVFGKVEGKAKLRARTRAALS 128 Query: 127 KLGLIDFRTRFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQDELLRI 186 +GL + P ++SGGM+QRV IAR L+++ ++LMDEPFGALDALTR +LQDELL+I Sbjct: 129 LVGLTHAEQKRPNEISGGMKQRVGIARALSMEPKVLLMDEPFGALDALTRAHLQDELLKI 188 Query: 187 WDEFRKTIVFVTHSIEEAIYLADRIVVMTYRPGTVKRDML 226 T+V VTH ++EA+ L+D+IV++T P ++L Sbjct: 189 VAATGSTVVMVTHDVDEAVLLSDKIVMLTNGPSATIGEIL 228 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 175 bits (444), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 93/189 (49%), Positives = 124/189 (65%), Gaps = 3/189 (1%) Query: 29 LKDINLAIPDGQFVCLLGPSGCGKSTLLNAIAGFALPSSGQILTDGKAVTEPGPDRGMV- 87 + +I+L+I G+F LLGPSGCGK+TLL IAGF P +G+IL DG +T P++ +V Sbjct: 19 VDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAGKILLDGVDLTGVPPEQRVVR 78 Query: 88 --FQEYALFPWMTVEQNVAFGLEIKGRPKAEIAQRVSQLLDKLGLIDFRTRFPKDLSGGM 145 FQ YALFP MTV N+AF LE+ PK+EI Q+V + L+ + L F R+P +LSGG Sbjct: 79 TVFQNYALFPHMTVAGNIAFPLEMANTPKSEIKQKVDEALEDVRLTGFAARYPHELSGGQ 138 Query: 146 RQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQDELLRIWDEFRKTIVFVTHSIEEAI 205 RQRV+IAR L ++L+DEP ALDA R +Q EL+ + E T V+VTH EA+ Sbjct: 139 RQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELINLQKEVGITFVYVTHDQAEAL 198 Query: 206 YLADRIVVM 214 L+ RI VM Sbjct: 199 ALSHRIAVM 207 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 175 bits (444), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 99/213 (46%), Positives = 139/213 (65%), Gaps = 11/213 (5%) Query: 10 ICIQSVHKVFKTDEREVVALKDINLAIPDGQFVCLLGPSGCGKSTLLNAIAGFALPSSGQ 69 I +++++K F VAL D++L P G+ LLGPSGCGK+TLL IAG P GQ Sbjct: 3 IEVKNINKKFGN----FVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQ 58 Query: 70 ILTDGK-AVTEPGPDR--GMVFQEYALFPWMTVEQNVAFGLEIK---GRP-KAEIAQRVS 122 +L DG+ A +R G VFQ YALF MTV +N+AFGL ++ RP ++ I ++V+ Sbjct: 59 VLLDGEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESVIKEKVT 118 Query: 123 QLLDKLGLIDFRTRFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQDE 182 +LL+ + L R+P LSGG RQR+A+AR LA++ ++L+DEPFGALDA R+ L+ Sbjct: 119 KLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRW 178 Query: 183 LLRIWDEFRKTIVFVTHSIEEAIYLADRIVVMT 215 L R+ DE T +FVTH EEA+ +AD+IV+M Sbjct: 179 LRRLHDELHVTSIFVTHDQEEALEVADQIVLMN 211 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.138 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 512,752 Number of extensions: 21108 Number of successful extensions: 228 Number of sequences better than 1.0e-08: 46 Number of HSP's gapped: 166 Number of HSP's successfully gapped: 49 Length of query: 269 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 189 Effective length of database: 736,747 Effective search space: 139245183 Effective search space used: 139245183 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)