BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0352.p
         (273 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093701|ref|YP_001098776.1| nitrate ABC transporter permeas...   109   1e-25
gi|134096489|ref|YP_001101564.1| putative transmembranee ABC tra...    70   1e-13

>gi|134093701|ref|YP_001098776.1| nitrate ABC transporter permease
           [Herminiimonas arsenicoxydans]
          Length = 304

 Score =  109 bits (273), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 113/190 (59%), Gaps = 10/190 (5%)

Query: 37  LPSPWAVLKKWVE-YATPLKPYDPEAGSWLAWAFSGELIMDAIGSLYRVVAGFLIGAGLA 95
           +PSP   LK  ++ +A P     P     + W        + + SL RV  GF + A + 
Sbjct: 78  IPSPAVTLKSAIDLFADPFYSNGPNDQG-IGW--------NILASLKRVAVGFGLAALVG 128

Query: 96  LPLGLLMGSSQRIYGLMNLTVQVIRPIPPIAYIPLAILWFGLGNPPALFLISLGAFFPVL 155
           +PLG ++G  + + G+ N  + +++P+ P+A++P+ +L F   +P A++ I + + +P++
Sbjct: 129 IPLGFMIGRFKFLSGMFNPIISLLKPVSPLAWLPIGLLVFKAADPAAIWSIFICSIWPMI 188

Query: 156 MNTIAGVRQVDSIYLRAARNLGASQSTLFLRVMLPAAVPYILSGVRIGIGTAFIVVIVAE 215
           +NT  GV++V   Y+  AR L  S+  +  +++ P+ +PY+L+GVR+ IGTA++V++ AE
Sbjct: 189 INTAVGVQRVPQDYMNVARVLNLSEWKIVTKILFPSVLPYMLTGVRLAIGTAWLVIVAAE 248

Query: 216 MIAVSNGLGF 225
           M+    G+GF
Sbjct: 249 MLTGGVGIGF 258


>gi|134096489|ref|YP_001101564.1| putative transmembranee ABC
           transporter protein [Herminiimonas arsenicoxydans]
          Length = 308

 Score = 70.1 bits (170), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 91/170 (53%), Gaps = 6/170 (3%)

Query: 91  GAGLALP--LGLLMGSSQRIYGLMNLTVQVIRPIPPIAYIPLAILWFGLGNPPALFLISL 148
           GAGL L   L +   +S+     +     +  P+P IA +PL++LWFGLG    +F++  
Sbjct: 120 GAGLVLAALLTVFAITSRIGRDFLETLTSMFNPLPAIALLPLSLLWFGLGTGSLVFVLIH 179

Query: 149 GAFFPVLMNTIAGVRQVDSIYLRAARNLGASQSTLFLRVMLPAAVPYILSGVRIGIGTAF 208
              + V +NT +G + V +       N G S      ++++PAA P IL+G++IG   A+
Sbjct: 180 SVVWAVALNTHSGFQSVSTTLRMVGHNYGLSGLRYVFQILIPAAFPSILTGLKIGWAFAW 239

Query: 209 IVVIVAEMI----AVSNGLGFRIMEAREYFWSDKIIAGMITIGLLGLAID 254
             +I AE++    + S GLG+ I E +       + AG++T+ ++GL ++
Sbjct: 240 RTLIAAELVFGVSSGSGGLGWFIYENKNQLEIPSVFAGLLTVIMIGLFVE 289


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.327    0.143    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 481,639
Number of extensions: 18338
Number of successful extensions: 91
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 2
Length of query: 273
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 193
Effective length of database: 736,747
Effective search space: 142192171
Effective search space used: 142192171
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)