BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0347.p
         (575 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095943|ref|YP_001101018.1| prolyl-tRNA synthetase [Hermini...  1001   0.0  
gi|134095006|ref|YP_001100081.1| threonyl-tRNA synthetase [Hermi...    59   5e-10

>gi|134095943|ref|YP_001101018.1| prolyl-tRNA synthetase
           [Herminiimonas arsenicoxydans]
          Length = 577

 Score = 1001 bits (2589), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/576 (82%), Positives = 519/576 (90%), Gaps = 2/576 (0%)

Query: 1   MRASRFFISTLKEAPSDAEIVSHKLMMRAGMIKRLGAGIYTYMPMGLRVIRKVEAIVREE 60
           MRASRFFISTLKEAPSDAEIVSHKLMMRAGMIKRLG+GIYTYMP+GLRVIRKVEAIVREE
Sbjct: 1   MRASRFFISTLKEAPSDAEIVSHKLMMRAGMIKRLGSGIYTYMPIGLRVIRKVEAIVREE 60

Query: 61  MNRAGAVELLMPVVQPAELWQETGRWNKMGAELMRVKDRHGRDFAIQPTSEEVVTDVARS 120
           MNRA A+ELLMP+VQPAELWQETGRW+KMG ELMRVKDRHGR++AIQPTSEEVVTDV RS
Sbjct: 61  MNRAHAIELLMPLVQPAELWQETGRWDKMGPELMRVKDRHGREYAIQPTSEEVVTDVVRS 120

Query: 121 ELRSYKQLPVNFYHIQTKFRDERRPRFGLMRGREFTMKDAYSFDRDVDGLKKSYQAMYDA 180
           E++SY+QLP+NFYHIQTKFRDERRPRFGLMRGREFTMKDAYSFDRD +GLK+SYQ M+DA
Sbjct: 121 EIKSYRQLPLNFYHIQTKFRDERRPRFGLMRGREFTMKDAYSFDRDAEGLKRSYQIMFDA 180

Query: 181 YVRIFTRFGLEFRAVAADNGAIGGSGSHEFHVIAATGEDALVYCPTSDYAANMEAAEALP 240
           YV+IF RFGL+FRAVAADNGAIGGSGSHEFHVIA TGEDA+VYCPTSDYAANMEAAEA+ 
Sbjct: 181 YVKIFNRFGLQFRAVAADNGAIGGSGSHEFHVIADTGEDAIVYCPTSDYAANMEAAEAIA 240

Query: 241 ADSSRGAATQALEKTATPAKSKCEAVAELLGLPLTRTVKSIVLAVDNEDPA--KKEIWLL 298
               R AATQ L KTATP K+KCE VA LL LPL +TVKSIVL V+ ED     KEIWLL
Sbjct: 241 PAVPRAAATQTLTKTATPGKAKCEDVAALLNLPLAQTVKSIVLTVEKEDKGVVSKEIWLL 300

Query: 299 LLRGDHELNEVKASKIPGLATYRFASEAEIVEWFGTPPGYLGPIGTKKPVKVVADRTVAN 358
           LLRGDHELNEVKA+KIPGL  YRFA+EAEIVEWFGTPPGYLGPI TKKPVKVV DRTVA 
Sbjct: 301 LLRGDHELNEVKAAKIPGLTDYRFANEAEIVEWFGTPPGYLGPINTKKPVKVVVDRTVAA 360

Query: 359 MADFVCGANEADFHYTGANWGRDLPEPQVADIRNVVEGDASPDGKGVLAIQRGIEVGHVF 418
           M+DFVCGANE DFH+TG NWGRDLPE  V D+RNVVEGD SPDGKGVLAIQRGIEVGHVF
Sbjct: 361 MSDFVCGANEVDFHFTGVNWGRDLPEAMVLDLRNVVEGDPSPDGKGVLAIQRGIEVGHVF 420

Query: 419 QLGTTYSEAMKATYLDEAGKPQPLVMGCYGIGVTRILGAAIEQNFDDRGIIWPTSIAPFE 478
           QLGT YSE MKATYLDE GKPQ + MGCYGIGVTRI+GAAIEQNFDDRGIIWP ++APFE
Sbjct: 421 QLGTAYSEKMKATYLDENGKPQLIQMGCYGIGVTRIVGAAIEQNFDDRGIIWPAALAPFE 480

Query: 479 VVLCPMGYDRSEAVKTEIDKLYAQLTEAGVDVVLDDRGERPGAMFADWELIGVPHRIVVG 538
           VVLCPMGYDRSE+VKTE DKLY  L  AGVDV+LDDRGERPGAMFADWELIG PHRIV+G
Sbjct: 481 VVLCPMGYDRSESVKTETDKLYEALLAAGVDVILDDRGERPGAMFADWELIGAPHRIVIG 540

Query: 539 DRGLKDGNIEYQGRRDTEATQVPLAEALAFIKGKLA 574
           +RGLK+G +EY+GRRD +AT V L + LAF++ +LA
Sbjct: 541 ERGLKEGALEYKGRRDADATAVALDDMLAFVQARLA 576


>gi|134095006|ref|YP_001100081.1| threonyl-tRNA synthetase
           [Herminiimonas arsenicoxydans]
          Length = 635

 Score = 59.3 bits (142), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 5/151 (3%)

Query: 17  DAEIVSHKLMMRA---GMIKRLGAGIYTYMPMGLRVIRKVEAIVREEMNRAGAVELLMPV 73
           +AE   H+ + RA      +    G+  + P G  V ++VE  +R      G  E+  P 
Sbjct: 237 EAEKRDHRKLGRALDLFHFQEEAPGLIFWHPKGWTVWQQVEQYMRRVYQDNGYQEVKAPQ 296

Query: 74  VQPAELWQETGRWNKMGAELMRVKDRHGRDFAIQPTSEEVVTDVARSELRSYKQLPVNFY 133
           +    LW+++G W     E M   +   R +A++P +      +  S+LRSY++LP+ + 
Sbjct: 297 ILDRSLWEKSGHWENY-KENMFTTESENRSYALKPMNCPGHVQIFASDLRSYRELPLRYG 355

Query: 134 HIQTKFRDERRPRF-GLMRGREFTMKDAYSF 163
                 R+E      G+MR R FT  D + F
Sbjct: 356 EFGQCHRNEPSGSLHGMMRVRGFTQDDGHIF 386


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.136    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,098,657
Number of extensions: 47581
Number of successful extensions: 127
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 2
Length of query: 575
Length of database: 1,000,347
Length adjustment: 87
Effective length of query: 488
Effective length of database: 713,682
Effective search space: 348276816
Effective search space used: 348276816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)