BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0344.p
         (372 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095946|ref|YP_001101021.1| gamma-glutamyl kinase [Herminii...   645   0.0  

>gi|134095946|ref|YP_001101021.1| gamma-glutamyl kinase
           [Herminiimonas arsenicoxydans]
          Length = 372

 Score =  645 bits (1665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/372 (84%), Positives = 343/372 (92%)

Query: 1   MQSVIQRAKRLIIKVGSSLVTNDGKGLDANAIARWAEQIAQLRALGKEVVLVSSGAVAEG 60
           M S IQ AKR+IIKVGSSLVTNDGKGLD  AI +WAEQI QLRALGKEVVLVSSGA+AEG
Sbjct: 1   MDSAIQSAKRIIIKVGSSLVTNDGKGLDTAAIQKWAEQIVQLRALGKEVVLVSSGAIAEG 60

Query: 61  MQRLGFDKRPTGIHHLQACAAVGQMGLAQIYETSFRKHELHTAQVLLTHADLADRERYLN 120
           MQRLGFDKRPTG+H LQACAAVGQMGLAQIYETSFR+H++ TAQ+LLTHADLADRERYLN
Sbjct: 61  MQRLGFDKRPTGVHELQACAAVGQMGLAQIYETSFRQHQVQTAQILLTHADLADRERYLN 120

Query: 121 ARSTLFALLQLGVVPVINENDTVVTDEIKFGDNDTLGALVANLIEADALIILTDQPGLFT 180
           ARSTLF LLQLGVVP+INENDTVVTDEIKFGDNDTLGALVANLIEADALIILTDQ GLF+
Sbjct: 121 ARSTLFTLLQLGVVPIINENDTVVTDEIKFGDNDTLGALVANLIEADALIILTDQRGLFS 180

Query: 181 ADPRKDPHATLIAEARAGDPSLELIAGGTGTGIGRGGMLTKILAAKRAATSGAHTVIAWG 240
           ADPRKDPHAT I EA+AGD  LE +AGG G+ +GRGGMLTKILAAKRAA SGAHTVIAWG
Sbjct: 181 ADPRKDPHATFIHEAQAGDVELEAMAGGAGSSLGRGGMLTKILAAKRAALSGAHTVIAWG 240

Query: 241 REDQVLTRLAAGEAIGTQLNAETAQLTARKQWMADHLKTAGRVVLDAGAVQKLSQEGKSL 300
           RE+QVLTRLAAGEAIGTQL A+TAQLTARKQWMADHL TAGR+VLD GAV KL+ EGKSL
Sbjct: 241 REEQVLTRLAAGEAIGTQLTAQTAQLTARKQWMADHLHTAGRIVLDQGAVLKLTAEGKSL 300

Query: 301 LPIGVVEVAGEFGRGDVITCVDAAGRAIARGMSNYNSSDARRIIRHPSSEIQAILGFVEE 360
           LPIGV+EV+G FGRGDVITCVD +GRAIARG++NY SS+ARRI+R PS++I +ILGFVEE
Sbjct: 301 LPIGVIEVSGSFGRGDVITCVDQSGRAIARGITNYTSSEARRIMRKPSTDILSILGFVEE 360

Query: 361 PELVHRDNLVLL 372
           PEL+HRDNLVLL
Sbjct: 361 PELIHRDNLVLL 372


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.134    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 669,095
Number of extensions: 26643
Number of successful extensions: 98
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 289
Effective length of database: 726,862
Effective search space: 210063118
Effective search space used: 210063118
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)