BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0342.p
         (85 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095948|ref|YP_001101023.1| 50S ribosomal protein L27 [Herm...   152   3e-39

>gi|134095948|ref|YP_001101023.1| 50S ribosomal protein L27
          [Herminiimonas arsenicoxydans]
          Length = 85

 Score =  152 bits (384), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 75/85 (88%), Positives = 79/85 (92%)

Query: 1  MAHKKGGGTTRNGRDSESKRLGVKVYGGQVINAGGIIVRQRGTRVHAGENVGVGKDHTLF 60
          MAHKKGGGTTRNGRDSESKRLGVKVYGGQVINAGGII+RQRGT+VH GENVG+GKDHTLF
Sbjct: 1  MAHKKGGGTTRNGRDSESKRLGVKVYGGQVINAGGIIIRQRGTKVHPGENVGMGKDHTLF 60

Query: 61 ALKDGKVKFVVKGLQQRQYATVVPA 85
          AL DGKV FV+KG  QRQY TVVPA
Sbjct: 61 ALTDGKVAFVIKGALQRQYVTVVPA 85


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.137    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 184,027
Number of extensions: 7117
Number of successful extensions: 15
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 85
Length of database: 1,000,347
Length adjustment: 55
Effective length of query: 30
Effective length of database: 819,122
Effective search space: 24573660
Effective search space used: 24573660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 121 (51.2 bits)