BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0341.p
         (103 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095949|ref|YP_001101024.1| 50S ribosomal protein L21 [Herm...   194   6e-52

>gi|134095949|ref|YP_001101024.1| 50S ribosomal protein L21
           [Herminiimonas arsenicoxydans]
          Length = 171

 Score =  194 bits (494), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 94/103 (91%), Positives = 97/103 (94%)

Query: 1   MYAVIKTGGKQYKVAAGEKLKVEQIPADIGSEITLDQVLAVGAGETVKFGAPLVAGATVL 60
           MYAVIKTGGKQYKV AGEK KVEQIPADIGSEITLDQVLA+GAGET+KFGAPLV GATVL
Sbjct: 69  MYAVIKTGGKQYKVVAGEKFKVEQIPADIGSEITLDQVLALGAGETIKFGAPLVEGATVL 128

Query: 61  ATVVAQGRHDKVKIFKMRRRKHYQKRQGHRQNYTELQIVSINA 103
           ATVV+ GRHDKVKIFKMRRRKHYQK QGHRQNYTELQIVSIN 
Sbjct: 129 ATVVSHGRHDKVKIFKMRRRKHYQKHQGHRQNYTELQIVSING 171


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.133    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 151,051
Number of extensions: 4031
Number of successful extensions: 21
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 103
Length of database: 1,000,347
Length adjustment: 68
Effective length of query: 35
Effective length of database: 776,287
Effective search space: 27170045
Effective search space used: 27170045
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 122 (51.6 bits)