BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0340.p
         (316 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095950|ref|YP_001101025.1| octaprenyl diphosphate synthase...   482   e-137
gi|134093559|ref|YP_001098634.1| geranyltranstransferase [Hermin...   100   9e-23

>gi|134095950|ref|YP_001101025.1| octaprenyl diphosphate synthase
           [Herminiimonas arsenicoxydans]
          Length = 329

 Score =  482 bits (1240), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 240/316 (75%), Positives = 279/316 (88%)

Query: 1   MQPIVADMEAVNAVIRRQLYSEVPLVNQVAEYIISAGGKRLRPVLVVLIANAFGYKGEHH 60
           +QPI ADM AV+AVIR++L+SEV LVNQ+A+YIISAGGKR+RPVLV+L+ANA GY+G H 
Sbjct: 14  IQPIAADMSAVDAVIRQKLHSEVALVNQIADYIISAGGKRIRPVLVLLMANALGYRGTHQ 73

Query: 61  HSLAAVIEFIHTATLLHDDVVDESSLRRGKQTANAMFGNAASVLVGDFLYSRAFQMMVAV 120
           + LAAV+EFIHTATLLHDDVVDES LRRG++TANA+FGNAASVLVGDFL+SRAFQMMV V
Sbjct: 74  YDLAAVVEFIHTATLLHDDVVDESELRRGRKTANALFGNAASVLVGDFLHSRAFQMMVTV 133

Query: 121 GNPRVMEIVAHATNVIAEGEVLQLLNMHNPDVDEAGYLQVIRSKTAKLFEAASQIGALIA 180
           GN R M+I+A ATNVIAEGEVLQLLNMH+PD+ E  Y QVIRSKTAKLFEAA+Q+GALIA
Sbjct: 134 GNIRAMQILADATNVIAEGEVLQLLNMHDPDISEERYTQVIRSKTAKLFEAAAQLGALIA 193

Query: 181 GADEAGIEAAGEYGRSIGTAFQLIDDVLDYSGNSTEIGKNVGDDLREGKPTLPLIWLMQH 240
           GA E  IEAA EYGRS+GTAFQLIDDVLDYSG++ +IGKNVGDDLREGK TLPLI+LM+H
Sbjct: 194 GASEDEIEAAAEYGRSLGTAFQLIDDVLDYSGHAEDIGKNVGDDLREGKATLPLIYLMEH 253

Query: 241 GTPQQRELVRTCIENGDEQHFDEVLSAITHSGALAYTREQAEIAARRAADAIISLPDSQF 300
           G  +QRELVR+CIENGDE+HFD VL A+T SGAL YT+ +AE AA RAA +I  LP+SQF
Sbjct: 254 GNTEQRELVRSCIENGDEEHFDAVLLAVTTSGALDYTKRKAEEAAARAAASIAGLPESQF 313

Query: 301 KKSLLELSAFAVDRNH 316
           K +LL LS+FAV RNH
Sbjct: 314 KDALLNLSSFAVHRNH 329


>gi|134093559|ref|YP_001098634.1| geranyltranstransferase
           [Herminiimonas arsenicoxydans]
          Length = 294

 Score =  100 bits (249), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 79/252 (31%), Positives = 126/252 (50%), Gaps = 26/252 (10%)

Query: 1   MQPIVADMEAVNAVIRRQLYSEVPLV-------NQVAEYIISAGGKRLRPVLVVLIANAF 53
           MQ     M+A    +   L   +P V       ++   Y +  GGKR+RP+LV      F
Sbjct: 1   MQSFDGWMKATQGEMELALVQHLPPVALTPARLHEAMHYAVLDGGKRVRPLLVYAAGALF 60

Query: 54  GYKGEHHHSLAAVIEFIHTATLLHDDV--VDESSLRRGKQTANAMFGNAASVLVGDFLYS 111
                     AA +E IH  +L+HDD+  +D+ +LRRGK T +  +  A ++LVGD L S
Sbjct: 61  DADAAELARAAAAVEMIHAYSLVHDDMPCMDDDALRRGKPTVHVKYDEACALLVGDALQS 120

Query: 112 RAFQMMVAVG-NP----RVMEIVAHATNVI--AEGEVLQL----LNMHNPDVDEAGYLQV 160
           +AF ++   G +P     ++ ++A A+  +    G+ + L    LN+   +++     Q+
Sbjct: 121 QAFDVLADGGIDPVRQLAMVRLLAKASGSLGMCGGQAIDLASVGLNLSLEELE-----QM 175

Query: 161 IRSKTAKLFEAASQIGALIAGADEAG-IEAAGEYGRSIGTAFQLIDDVLDYSGNSTEIGK 219
            R KT  L   +  +GAL   +  A   +A   Y  +IG AFQ++DDVLD + +S  +GK
Sbjct: 176 HRLKTGALLRVSVLLGALAGKSLSAEETQALDSYAAAIGLAFQVVDDVLDATADSATLGK 235

Query: 220 NVGDDLREGKPT 231
             G D  + KPT
Sbjct: 236 TAGKDAADNKPT 247


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.134    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 514,101
Number of extensions: 18565
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 2
Length of query: 316
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 234
Effective length of database: 730,157
Effective search space: 170856738
Effective search space used: 170856738
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)