BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0331.p
         (429 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096341|ref|YP_001101416.1| hypothetical protein HEAR3187 [...   142   4e-35
gi|134093655|ref|YP_001098730.1| integral membrane protein [Herm...   105   6e-24

>gi|134096341|ref|YP_001101416.1| hypothetical protein HEAR3187
           [Herminiimonas arsenicoxydans]
          Length = 426

 Score =  142 bits (357), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 116/424 (27%), Positives = 199/424 (46%), Gaps = 31/424 (7%)

Query: 25  MTETALMAANRHRLRHLAKQGNRAAITILWLLDRTERLLSLILIANTVINALATA----- 79
           M+E A++ + R RL+ LA+ G+R A   L L +   R LS I +  T+I     A     
Sbjct: 1   MSEIAIVTSKRIRLQKLAENGSRGAKAALDLSESPSRFLSTIQVGITLIGIFNGAFGEAS 60

Query: 80  LVTALA-----IAAFGNHQRVITAATAFVAALL--IVFAEIVPKVIGATHPERIALFTSF 132
           LV  L      I     + R I      V      ++  E+VPK I   +PE +A   S 
Sbjct: 61  LVERLTPEIALIPVLSMYAREIALGIVVVGITFGSLILGELVPKRIAMQYPEVVA---SV 117

Query: 133 ILKPLMRVAKPLVWFVNIFVSAILKLLHIKTGARAAEQRISPEELRSIVLEG---GSFIP 189
           +  P++ +++ +  FV I       +L I       +  ++ EE+  ++ EG   G F  
Sbjct: 118 VAAPMLWLSRLMGPFVKILTGTTEFILRILGMHHKKDDAVTEEEIAGLIREGTDAGLFEK 177

Query: 190 QKHKSILLNLFDLEKISVEDVMTPRAQVEALNLAAPVEDILHQLATCYHNKLPVFEGEIN 249
            +H  I+     L+   V  +MTPR  V  ++L   +E  L ++A   +N+ PV  G I+
Sbjct: 178 TEH-DIVSRALRLDDQRVAALMTPRLDVHFIDLEDTIETNLAKIADSSYNRFPVCRGNIS 236

Query: 250 HIVGILHVRKTVSLFRQ---EEEISHDDIRALLSAPYYVPVETDIFTQLQYFQENHERLG 306
           HI+GI+H     SLF Q    + I+  DI      P +VP        L+  ++N   L 
Sbjct: 237 HIIGIVHAG---SLFEQMIRGKTITSLDIEGATRPPLFVPETISAMQLLETLKKNRAELA 293

Query: 307 IVVDEYGEVQGLVTLEDIIEEMIGEFTTSSPGSSGEGFNWDKEGTCLLEGSTTLRDINKR 366
           +V+DEYGE++G+VTL D++  ++G+ +        +G   D +G+ L++G  +     + 
Sbjct: 294 LVIDEYGEIEGIVTLSDVLGALVGDVSVIDEHHEVDGVRRD-DGSWLIDGGVSFDRFREL 352

Query: 367 L--GLKLPLDGPKTIN---GLLLETLQDIPEASVAVKIDGCVIEIVQVQNQAIRMVKLIA 421
           L   ++ P +   T +   G ++  L  IP+ S + + +G  IE+V +    I  + +  
Sbjct: 353 LETDVRFPEEASGTYHTLAGFVMTFLGHIPQMSDSFEWEGYRIEVVDMDRNRIDRLLITK 412

Query: 422 LPPP 425
           + PP
Sbjct: 413 IDPP 416


>gi|134093655|ref|YP_001098730.1| integral membrane protein
           [Herminiimonas arsenicoxydans]
          Length = 295

 Score =  105 bits (261), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 119/245 (48%), Gaps = 25/245 (10%)

Query: 194 SILLNLFDLEKISVEDVMTPRAQVEALNLAAPVEDILHQLATCYHNKLPVFEGEINHIVG 253
           S++  +F + ++S  D+M PR+Q++ +++  P+ + L  +    H++ P  EGE + +VG
Sbjct: 56  SMIEGVFQVSELSARDIMVPRSQMDVIDITKPIAEWLPMVLETAHSRFPAIEGERDQVVG 115

Query: 254 ILHVRKTVSLFRQEEEISHDDIRALLSAPYYVPVETDIFTQLQYFQENHERLGIVVDEYG 313
           IL  +  +  +      +  D+R +L    ++P    +   L  F+  H  + IVVDEYG
Sbjct: 116 ILMAKDLLRYYAG----ASFDVRQMLRPAVFIPESKRLNVLLSDFRAKHNHMAIVVDEYG 171

Query: 314 EVQGLVTLEDIIEEMIGEFTTSSPGSSGEGFNWDKEGTCLL-------------EGSTTL 360
            V GL+T+ED++E+++G+            +++D+E   +L             +  T L
Sbjct: 172 GVAGLITIEDVLEQIVGDIEDE--------YDFDEEQDNILAIKAGEYGPRWRIKALTEL 223

Query: 361 RDINKRLGLKLPLDGPKTINGLLLETLQDIPEASVAVKIDGCVIEIVQVQNQAIRMVKLI 420
             +N+ LG  L      T+ G +   L  +P     + ID    EI++   + I ++ + 
Sbjct: 224 TQVNEELGTALTSQDVDTLGGFITNHLARMPHKGEVIDIDNLRFEILRADARQIHVLLVE 283

Query: 421 ALPPP 425
            LP P
Sbjct: 284 KLPAP 288


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.138    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 728,576
Number of extensions: 27774
Number of successful extensions: 101
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 2
Length of query: 429
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 345
Effective length of database: 723,567
Effective search space: 249630615
Effective search space used: 249630615
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)