BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0328.p
         (287 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095953|ref|YP_001101028.1| type 4 prepilin-like proteins l...   280   7e-77

>gi|134095953|ref|YP_001101028.1| type 4 prepilin-like proteins
           leader peptide processing enzyme [Herminiimonas
           arsenicoxydans]
          Length = 286

 Score =  280 bits (715), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 151/256 (58%), Positives = 189/256 (73%)

Query: 8   AVSGSPVLSGVAALLGLLVGSFLNVVIHRLPAMMLRESANFVAHERGEALPHTERYNLWL 67
           A +GS + + VA + GLL+GSFLNVVIHR+P MM RES N+VAHE G+ LPH ERY+L +
Sbjct: 7   APAGSVLPAIVAGVFGLLIGSFLNVVIHRIPKMMQRESDNYVAHESGKPLPHEERYDLLM 66

Query: 68  PHSACPHCATPLALHHKLPVLSWLLLRGRCAYCSAPISLRYPLVELLCAVLFALLAWRYG 127
           P SACP C   +     +PV S+  LRG+C  C   IS+RYP+VELL  VL A L W +G
Sbjct: 67  PRSACPQCGHQITAVENIPVFSYAFLRGKCIACKTHISMRYPVVELLTGVLSAFLIWHFG 126

Query: 128 LGLTGLALMTGAAFLVALAFIDAQTMLLPDDLTLPLLWLGLLVNLTHRLVPLQDAVLGAM 187
            GL GLA +  A  L+A+ FIDA T LLPDDLTL LLWLGLL+NL    VPL++AV+GA 
Sbjct: 127 SGLLGLATLVFAYLLIAMTFIDADTQLLPDDLTLSLLWLGLLLNLNATFVPLEEAVIGAT 186

Query: 188 AGYGVLWLIFWCFKLTTGKEGLGYGDFKLMAALGAWLGWQALPLVLLLASALGAVLGLAL 247
           AGY  LW I+W FKL TGKEG+GYGDFKL+AALGAWLGW+ LP+++LL+S +GAV+G+AL
Sbjct: 187 AGYMSLWSIYWLFKLATGKEGMGYGDFKLLAALGAWLGWKMLPVIILLSSLVGAVVGIAL 246

Query: 248 MLGGRHQRGQAIPFGP 263
           ++  +  R   IPFGP
Sbjct: 247 IMLAKRGRDIPIPFGP 262


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.329    0.144    0.474 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 394,531
Number of extensions: 11765
Number of successful extensions: 54
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 206
Effective length of database: 733,452
Effective search space: 151091112
Effective search space used: 151091112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 128 (53.9 bits)