BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0325.p
         (61 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095956|ref|YP_001101031.1| hypothetical protein HEAR2794 [...    97   2e-22

>gi|134095956|ref|YP_001101031.1| hypothetical protein HEAR2794
          [Herminiimonas arsenicoxydans]
          Length = 66

 Score = 97.1 bits (240), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 46/57 (80%), Positives = 49/57 (85%), Gaps = 1/57 (1%)

Query: 1  MATIVDCPTCGTKVEWSEKNKFRPFCSERCKQIDLGAWAEEKYTIPAVNLPLEDEDD 57
          M TIVDCPTCGTKVEWSE +KFRPFCS RCKQIDLGAWAEEKY IP  N PL+D D+
Sbjct: 1  MVTIVDCPTCGTKVEWSETSKFRPFCSNRCKQIDLGAWAEEKYVIPVAN-PLDDFDE 56


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.134    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 123,074
Number of extensions: 3466
Number of successful extensions: 7
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 61
Length of database: 1,000,347
Length adjustment: 33
Effective length of query: 28
Effective length of database: 891,612
Effective search space: 24965136
Effective search space used: 24965136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 121 (51.2 bits)