BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0324.p
         (137 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095957|ref|YP_001101032.1| putative CTP pyrophosphohydrola...   226   3e-61

>gi|134095957|ref|YP_001101032.1| putative CTP pyrophosphohydrolase
           [Herminiimonas arsenicoxydans]
          Length = 136

 Score =  226 bits (577), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 108/127 (85%), Positives = 115/127 (90%)

Query: 7   PIDVAVGILMQPNGDVLLGQRPAGKPYEGYWEFPGGKVEPGESIFAALQREFKEELGIEV 66
           PIDVAVGILM+PNGDVLLGQRP GKPY GYWEFPGGKVE  E+I  AL+REF EELG+EV
Sbjct: 8   PIDVAVGILMKPNGDVLLGQRPDGKPYAGYWEFPGGKVEADEAIIDALKREFVEELGVEV 67

Query: 67  IDGEPWCGVEHVYPHAHVRLHFYISRQWRGQPQSLEGQAFAWQGSVGVEPLLPATIPLIQ 126
           I  EPWCGVEHVYPHAHVRLHFYISR WRG+PQSLE QAFAWQG VGVEPLLPATIPLI+
Sbjct: 68  ISAEPWCGVEHVYPHAHVRLHFYISRDWRGEPQSLENQAFAWQGCVGVEPLLPATIPLIE 127

Query: 127 WLDQLRY 133
           WLD+LRY
Sbjct: 128 WLDKLRY 134


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.141    0.460 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 322,771
Number of extensions: 13903
Number of successful extensions: 40
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 1
Length of query: 137
Length of database: 1,000,347
Length adjustment: 73
Effective length of query: 64
Effective length of database: 759,812
Effective search space: 48627968
Effective search space used: 48627968
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 124 (52.4 bits)