BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0320.p
         (917 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095960|ref|YP_001101035.1| preprotein translocase ATPase s...  1616   0.0  

>gi|134095960|ref|YP_001101035.1| preprotein translocase ATPase
           secretion subunit [Herminiimonas arsenicoxydans]
          Length = 921

 Score = 1616 bits (4185), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 768/921 (83%), Positives = 846/921 (91%), Gaps = 4/921 (0%)

Query: 1   MSFLTKIFGSRNQRLLKQYQKIVRQINALEPSVEKLTDAELQAKTPEFKQRIAGGETLDA 60
           MS LT+IFGSRNQRLLKQYQK VR+INALEP++E+L+DA LQAKTPEFK+R+A GE +D+
Sbjct: 1   MSLLTQIFGSRNQRLLKQYQKTVREINALEPAMEQLSDAALQAKTPEFKERLAKGEDIDS 60

Query: 61  ILPEAFAVCREASRRVLKMRHFDVQLIGGMALHFGKIAEMRTGEGKTLMATLPAYLNALA 120
           ILPEAFAVCREAS+RVLKMRHFDVQLIGGM LH+GKIAEM TGEGKTLMATLP YLNAL 
Sbjct: 61  ILPEAFAVCREASKRVLKMRHFDVQLIGGMTLHYGKIAEMGTGEGKTLMATLPTYLNALT 120

Query: 121 GKGVHVVTVNDYLAQRDAEDMGRLYSWLGLTTGVNLSQMEHDVKQEAYAADITYGTNNEF 180
           GKGVHVVTVNDYLAQRDAE MG LY WLGL+TGVN+SQ++HD KQ AY +DITYGTNNEF
Sbjct: 121 GKGVHVVTVNDYLAQRDAEWMGTLYGWLGLSTGVNMSQIDHDAKQIAYNSDITYGTNNEF 180

Query: 181 GFDYLRDNMVFDADDRVQRALNFAIVDEVDSILIDEARTPLIISGQAENHTELYHKMNAV 240
           GFDYLRDNMV+D  DRVQR L+FA+VDEVDSILIDEARTPLIISGQAENHTELYHK+NAV
Sbjct: 181 GFDYLRDNMVYDTADRVQRDLHFAVVDEVDSILIDEARTPLIISGQAENHTELYHKINAV 240

Query: 241 PPLLTLQIGEETPDGKGKVEVPGDYTKDEKSHQVLLTEAGHDKAEEILTQMGLLPEGASL 300
           PPLLTLQIGEETPDGKG VEVPGDYTKDEK+HQVLLTEAGH+KAE+ILT+MGLLPEGASL
Sbjct: 241 PPLLTLQIGEETPDGKGTVEVPGDYTKDEKAHQVLLTEAGHEKAEQILTRMGLLPEGASL 300

Query: 301 YDAANITLIHHLYAALRAHTLYHRDQHYVVQNGEVVIVDEFTGRLMTGRRWSDGLHQAVE 360
           YDAANITLIHHLYAALRAHTLYH+DQHYVVQN EVVIVDEFTGRLMTGRRWSDGLHQAVE
Sbjct: 301 YDAANITLIHHLYAALRAHTLYHKDQHYVVQNDEVVIVDEFTGRLMTGRRWSDGLHQAVE 360

Query: 361 AKEGVKIQNENQTLASITFQNYFRMYAKLSGMTGTADTEAYEFQEIYHLETVVIPPNRPN 420
           AKEGV+IQNENQTLASITFQNYFRMY+KL+GMTGTADTEAYEFQEIY LETVVIP NRPN
Sbjct: 361 AKEGVRIQNENQTLASITFQNYFRMYSKLAGMTGTADTEAYEFQEIYGLETVVIPQNRPN 420

Query: 421 ARKDRQDQVYKTAQEKYMAMVKDIQDCYERGQPVLVGTTSIENSELLSGILTKSKLPHNV 480
            RKDRQDQVYK+++EKY AM+KDIQDCYERGQPVLVGTTSIENSELLSGIL K+ LPHNV
Sbjct: 421 QRKDRQDQVYKSSEEKYGAMLKDIQDCYERGQPVLVGTTSIENSELLSGILNKANLPHNV 480

Query: 481 LNAKQHAREAEIVAQAGRPKMITIATNMAGRGTDIVLGGNVGKQIQLIEADDSLSDADKA 540
           LNAKQHAREAEI+AQAGRPK ITIATNMAGRGTDIVLGGNV KQ+Q+IEA+D+LS+A+K 
Sbjct: 481 LNAKQHAREAEIIAQAGRPKAITIATNMAGRGTDIVLGGNVAKQVQIIEANDALSEAEKT 540

Query: 541 AKSQQLRDEWQSLHDHVVNAGGLHIIGTERHESRRVDNQLRGRSGRQGDPGSSRFYLSLD 600
           A++Q+L DEWQSLHD VV AGGLHIIGTERHESRRVDNQLRGR+GRQGDPGSSRFYLSLD
Sbjct: 541 AQAQKLGDEWQSLHDQVVAAGGLHIIGTERHESRRVDNQLRGRAGRQGDPGSSRFYLSLD 600

Query: 601 DALLRIFAGDRVRAIMDRLKMPEGEPIEAGIVTRSIESAQRKVEARNFDIRKQLLEYDDV 660
           DALLRIFAGDRVRAIMDRLKMPEGEPIEAGIV+RSIESAQRKVEARNFDIRKQLLEYDDV
Sbjct: 601 DALLRIFAGDRVRAIMDRLKMPEGEPIEAGIVSRSIESAQRKVEARNFDIRKQLLEYDDV 660

Query: 661 ANDQRKVIYQQRNELLESVDMAEMIASLRDGVFTDLFRQHVPAESMEEQWDIPGLQAALK 720
           ANDQRKVIYQQRNELLE+ D++E+I SLR GVF DLFR +VP +SMEEQWD+  L   L+
Sbjct: 661 ANDQRKVIYQQRNELLETQDVSELITSLRQGVFADLFRTYVPEQSMEEQWDLKALDEILR 720

Query: 721 NEWQLDVDLDATLKAEPDMADDELLEHLLKAAKEAYDAKVAVVGVEAFAGFERSVMLQAI 780
           NEWQ+D  L A L+AEP++ D+E+LE LL+    AY+AKVA+VG E+FAGFER VMLQ++
Sbjct: 721 NEWQIDFSLAAVLEAEPNITDEEMLERLLQVTDAAYEAKVAIVGRESFAGFERGVMLQSV 780

Query: 781 DNHWREHLAALDHLRQGIHLRGYAQKNPKQEYKREAFELFAQMLDLIKNEVIKVVMTVRI 840
           D++WREHLAALDHLRQGIHLRGYAQKNPKQEYKREAFELF QML+LIK+ V+K VMTVRI
Sbjct: 781 DSNWREHLAALDHLRQGIHLRGYAQKNPKQEYKREAFELFGQMLNLIKDAVVKTVMTVRI 840

Query: 841 QSREEIEAAEESLSGGSPINVNYQHADFDPEAAPEELLAPTVQ----ATSDDGSEYPKVG 896
           QSREEI+AAEE L+     NV+YQHADFDP+AAPEELLAPT Q    A+    +  PKVG
Sbjct: 841 QSREEIDAAEEQLAQAHVENVHYQHADFDPDAAPEELLAPTAQAHEAASQPQVNTMPKVG 900

Query: 897 RNDPCPCGSGKKYKQCHGKLA 917
           RNDPCPCGSGKKYKQCHG+LA
Sbjct: 901 RNDPCPCGSGKKYKQCHGRLA 921


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.133    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,652,732
Number of extensions: 68027
Number of successful extensions: 185
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 1
Length of query: 917
Length of database: 1,000,347
Length adjustment: 90
Effective length of query: 827
Effective length of database: 703,797
Effective search space: 582040119
Effective search space used: 582040119
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 133 (55.8 bits)