BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0319.p (325 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095961|ref|YP_001101036.1| putative metalloendopeptidase [... 330 5e-92 gi|134093530|ref|YP_001098605.1| putative endopeptidase [Hermini... 84 9e-18 gi|134094483|ref|YP_001099558.1| lipoprotein precursor [Herminii... 66 2e-12 gi|134096132|ref|YP_001101207.1| protease [Herminiimonas arsenic... 64 7e-12 >gi|134095961|ref|YP_001101036.1| putative metalloendopeptidase [Herminiimonas arsenicoxydans] Length = 233 Score = 330 bits (847), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 153/226 (67%), Positives = 191/226 (84%), Gaps = 1/226 (0%) Query: 84 MAVKVGEMQAQMMRLDALGERVQGLAGIRPEEFNFKEAPGRGGAEVSSQAGPARDVSMDE 143 MA +VGEMQAQ+MRLDALGERVQGLAG++P EFNF+E PGRGG E + +RD+++ E Sbjct: 1 MARRVGEMQAQLMRLDALGERVQGLAGVKPSEFNFREMPGRGGME-PMDSTSSRDLTVSE 59 Query: 144 LRRMLDSLAVDAGHRADYLNAVESTLMGDKIKSRLLPTNQPVNVAYNSSSFGWRLDPFTG 203 + +LD++A D RADY+N VESTLM DKIKS+LLPT+QPVNV+YN+S+FG RLDPF+G Sbjct: 60 FKALLDAMAHDVERRADYMNVVESTLMTDKIKSKLLPTSQPVNVSYNASTFGRRLDPFSG 119 Query: 204 HNAFHEGLDFPAPVGTRIVAAAAGVVIASEYHYQFGNMLEIDHGNNIITRYAHASRLYVK 263 +A HEG+DF AP+GT I AAA GVV +E+H Q+GNM+EIDHGN++ITRYAH SRL ++ Sbjct: 120 RSAMHEGIDFAAPIGTPIRAAAGGVVTVAEFHPQYGNMMEIDHGNDMITRYAHTSRLLMQ 179 Query: 264 VGDIVKRGQHVADVGSTGRSTGAHLHFEVRIRGIAQDPRKFLALGA 309 VGDIV+RGQH+AD+G+TGRSTG HLHFEVRI+G+AQDP KFL GA Sbjct: 180 VGDIVRRGQHIADIGTTGRSTGPHLHFEVRIKGVAQDPHKFLLAGA 225 >gi|134093530|ref|YP_001098605.1| putative endopeptidase [Herminiimonas arsenicoxydans] Length = 456 Score = 84.0 bits (206), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 50/133 (37%), Positives = 72/133 (54%), Gaps = 4/133 (3%) Query: 171 GDKIKSRLLPTNQPVNVAYNSSSFGWRLDPFTGHNAFHEGLDFPAPVGTRIVAAAAGVVI 230 G +K L + P+ + SS F R P +G H+G+DF A GT I A+ GV+ Sbjct: 281 GKSLKKAFLKS--PLEFSRISSGFSLRKHPISGKWKAHKGVDFAAATGTPIRASGDGVID 338 Query: 231 ASEYHYQFGNMLEIDHGNNIITRYAHASRLY--VKVGDIVKRGQHVADVGSTGRSTGAHL 288 + +GN++ I H + T YAH SR ++ G V +GQ + VG+TG STG HL Sbjct: 339 FAGTQGGYGNVVVIKHWSKYSTAYAHMSRFAPNMRKGTKVSQGQVIGYVGTTGWSTGPHL 398 Query: 289 HFEVRIRGIAQDP 301 H+E R+ A+DP Sbjct: 399 HYEFRVNNEARDP 411 >gi|134094483|ref|YP_001099558.1| lipoprotein precursor [Herminiimonas arsenicoxydans] Length = 304 Score = 66.2 bits (160), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 10/133 (7%) Query: 179 LPTNQPVNVAYNSSSFGWRLDPFTGH-----NAFHEGLDFPAPVGTRIVAAAAG-VVIAS 232 +P Y + S+ W P G + +G+D G +++AA AG V+ A Sbjct: 173 IPAAAATGAEYETVSWMW---PAEGKLVATFDDNKKGIDIAGKSGQQVLAAGAGKVMYAG 229 Query: 233 EYHYQFGNMLEIDHGNNIITRYAHASRLYVKVGDIVKRGQHVADVGSTGRSTGAHLHFEV 292 +GN++ + H + +++ YAH ++VK G V +GQ +AD+G + + LHFE+ Sbjct: 230 SGIRGYGNLVIVKHTSTLLSAYAHNKIIHVKEGQSVSKGQKIADMGDSDADS-VKLHFEI 288 Query: 293 RIRGIAQDPRKFL 305 R +G DP KFL Sbjct: 289 RQQGKPVDPSKFL 301 >gi|134096132|ref|YP_001101207.1| protease [Herminiimonas arsenicoxydans] Length = 452 Score = 64.3 bits (155), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 36/93 (38%), Positives = 55/93 (59%) Query: 209 EGLDFPAPVGTRIVAAAAGVVIASEYHYQFGNMLEIDHGNNIITRYAHASRLYVKVGDIV 268 +GL A GT + A AAG VI +E+ FGN++ +DHG+ +T Y + + GD V Sbjct: 353 KGLFIRANEGTEVKAIAAGRVIFAEWLRGFGNLIIVDHGSQYMTIYGNNQSVLKHAGDAV 412 Query: 269 KRGQHVADVGSTGRSTGAHLHFEVRIRGIAQDP 301 K G +A G++G + + L+FE+R +G A DP Sbjct: 413 KAGDVIASTGNSGGNEQSGLYFEMRHQGRAFDP 445 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.136 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 594,251 Number of extensions: 23346 Number of successful extensions: 75 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 72 Number of HSP's successfully gapped: 4 Length of query: 325 Length of database: 1,000,347 Length adjustment: 82 Effective length of query: 243 Effective length of database: 730,157 Effective search space: 177428151 Effective search space used: 177428151 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)