BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0318.p
         (181 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095962|ref|YP_001101037.1| hypothetical protein HEAR2802 [...   160   3e-41

>gi|134095962|ref|YP_001101037.1| hypothetical protein HEAR2802
           [Herminiimonas arsenicoxydans]
          Length = 166

 Score =  160 bits (406), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 85/165 (51%), Positives = 113/165 (68%), Gaps = 5/165 (3%)

Query: 1   MKYPSTFTPYRPAPTSAQRMAKSTKGAADFLRSNSTMAALLPALARMGTLQQSVAANLPA 60
           M+ PS FTP++    S     K+ KGAA+FLRS+  MAAL+P++ RM  LQ+  AA LPA
Sbjct: 3   MRAPS-FTPFKQNTPSQ----KNAKGAAEFLRSHDKMAALMPSITRMAALQKDCAAALPA 57

Query: 61  MFAACQILQFEAGVLVMSAPNAALAARLKQQTPRLQDRLLKDGWQVNSIRIKVQVGRMAP 120
           MF  C +LQFEA  LV+S PNAALAARLKQQ P+LQD LL+ GWQ+NSIR+KVQV ++  
Sbjct: 58  MFIHCAVLQFEADQLVLSVPNAALAARLKQQCPKLQDELLQRGWQINSIRLKVQVSKILV 117

Query: 121 PPPPKRVLELTENALSSFAELSSTLARDPRSQGLKEAIDAMIRRR 165
                  L L   A+S+F+EL++ L   PR+Q LK A+ +M++  
Sbjct: 118 KSTASAPLVLPTQAISAFSELNAALEDSPRNQALKNALASMMQHH 162


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.127    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 285,786
Number of extensions: 9333
Number of successful extensions: 46
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 1
Length of query: 181
Length of database: 1,000,347
Length adjustment: 76
Effective length of query: 105
Effective length of database: 749,927
Effective search space: 78742335
Effective search space used: 78742335
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)