BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0316.p
         (311 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095963|ref|YP_001101038.1| UDP-3-O-[3-hydroxymyristoyl] N-...   529   e-152

>gi|134095963|ref|YP_001101038.1| UDP-3-O-[3-hydroxymyristoyl]
           N-acetylglucosamine deacetylase [Herminiimonas
           arsenicoxydans]
          Length = 311

 Score =  529 bits (1362), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 251/311 (80%), Positives = 277/311 (89%)

Query: 1   MLKQRTIKNLVKTTGVGLHSGTKVELTLRPAAPDTGIIFRRIDLDPVVELPMIATGVGDT 60
           MLKQRTIK  VK+ GVGLHSGTKVELTLRPA  DTGI+F RIDLDPVVELP  A  VGDT
Sbjct: 1   MLKQRTIKQSVKSVGVGLHSGTKVELTLRPAPVDTGIVFYRIDLDPVVELPAQALLVGDT 60

Query: 61  RMASTLTKDGAKVSTVEHLLSACAGLGIDNLYIDLTAEEIPIMDGSASSFVFLLQQAGLQ 120
           RMASTL +  AKVSTVEHL+SACAGLGIDNLY+DLTAEE+PIMDGSASSFVFLLQQAGLQ
Sbjct: 61  RMASTLQQGDAKVSTVEHLMSACAGLGIDNLYVDLTAEEVPIMDGSASSFVFLLQQAGLQ 120

Query: 121 EQNAPKKFIRVKKPVEVREGRGDKEKWARLEPYDGFRLKFFIEFNHPAVDGTGQVAEVDF 180
           EQ A KKFIR+KK VEVR G G++E WARLEPY+GF+LKFFIEFNHPAVD TGQ AE+DF
Sbjct: 121 EQEAAKKFIRIKKAVEVRHGSGEREIWARLEPYEGFKLKFFIEFNHPAVDATGQTAEIDF 180

Query: 181 GIDSYVKEIARARTFGFMQDVETLRGMGLARGGSFENAIVMDEYRILNADGLRYDNEFVR 240
             +SYVK++ARARTFGFMQD+ETLRGMGL RGGS ENAIVMDEYRILN+DGLRYDNEFVR
Sbjct: 181 SFESYVKDVARARTFGFMQDMETLRGMGLIRGGSLENAIVMDEYRILNSDGLRYDNEFVR 240

Query: 241 HKILDAIGDLYIIGHPLLASYDAHKSGHGLNNLLLRELLSQPDAYEIVSFDKLEQAPQTY 300
           HKILDAIGDLY++GHPL+ASY+AHKSGH LNNLL+R LL QPDAYEIV+FD++E AP+ Y
Sbjct: 241 HKILDAIGDLYLVGHPLIASYNAHKSGHMLNNLLVRALLEQPDAYEIVTFDQIEAAPKDY 300

Query: 301 VMQAQQEWALN 311
             QA QEW LN
Sbjct: 301 ARQAGQEWVLN 311


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.138    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 610,687
Number of extensions: 26055
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 229
Effective length of database: 730,157
Effective search space: 167205953
Effective search space used: 167205953
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)