BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0314.p
         (396 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095966|ref|YP_001101041.1| tubulin-like GTP-binding protei...   657   0.0  

>gi|134095966|ref|YP_001101041.1| tubulin-like GTP-binding protein
           and GTPase, forms circumferential ring in cell division
           [Herminiimonas arsenicoxydans]
          Length = 394

 Score =  657 bits (1695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/396 (89%), Positives = 374/396 (94%), Gaps = 2/396 (0%)

Query: 1   MEIDMVDNATLGTIIKVVGVGGAGGNAVQHMINKGVSGVEFIAANTDAQALKQSKAHNVI 60
           MEIDM++N   GT+IKVVGVGGAGGNAVQHMIN+GVSGVEFI ANTDAQAL+ SKAHNVI
Sbjct: 1   MEIDMLENVAQGTVIKVVGVGGAGGNAVQHMINRGVSGVEFIVANTDAQALQLSKAHNVI 60

Query: 61  QIGDTGLGAGMQPEIGRRLAEETRARIEDSLRGAHMVFIAAGMGGGTGTGAAPVVAQVAK 120
           QIG+TGLGAGM+P +GR+LAEETR RIED+LRGAHMVFIAAGMGGGTGTGAAP++AQ+A+
Sbjct: 61  QIGETGLGAGMKPAVGRQLAEETRPRIEDALRGAHMVFIAAGMGGGTGTGAAPIIAQIAR 120

Query: 121 SLGALTVAVVSKPFSYEGQKCMDIADAGLEELSQHVDSLIIILNEKLEEIYEDDSMIEWL 180
             GALTVAVVSKPFSYEGQKCMDIAD GLE LSQHVDSLIIILNEKLEEIYEDDSMIEWL
Sbjct: 121 EQGALTVAVVSKPFSYEGQKCMDIADEGLEALSQHVDSLIIILNEKLEEIYEDDSMIEWL 180

Query: 181 SHADDVLNNAVAGIAEIINVPGHINVDFNDVKTIMGEQGKAMMGTATAAGVDRARVAAEQ 240
            HADDVLNNAVAGIAEIINVPGHINVDFNDVKTIMGEQGKAMMGTATA GVDRAR+AAEQ
Sbjct: 181 QHADDVLNNAVAGIAEIINVPGHINVDFNDVKTIMGEQGKAMMGTATAHGVDRARIAAEQ 240

Query: 241 AVASPLLDGIDLSGARGVLVNVTASRSLKGKEIKEVMATVRAFAAPDASIAQGIAYDDGM 300
           AVASPLLDGIDLSGARGVLVNVTASRSLKGKEIKEVMATVRAFAAPDASIAQGIAYDD M
Sbjct: 241 AVASPLLDGIDLSGARGVLVNVTASRSLKGKEIKEVMATVRAFAAPDASIAQGIAYDDEM 300

Query: 301 GDEIRVTVVATGLGRARKAVQLVQTPVMRTGTHNEPMMAVGGNLQQGAAQPAGAAFGGLK 360
           GD+IRVTVVATGLGRARK VQLVQTP++RTGTHNEPMMA  G + QG+ QPA A+F GLK
Sbjct: 301 GDDIRVTVVATGLGRARKGVQLVQTPMLRTGTHNEPMMANTG-MMQGSVQPA-ASFDGLK 358

Query: 361 APAVWRRESASDTVRALEKNGMETYDIPAFLRKQAD 396
           APAVWRRESASDTVRALEKNGMETYDIPAFLRKQAD
Sbjct: 359 APAVWRRESASDTVRALEKNGMETYDIPAFLRKQAD 394


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.315    0.132    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 572,656
Number of extensions: 18460
Number of successful extensions: 74
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 312
Effective length of database: 723,567
Effective search space: 225752904
Effective search space used: 225752904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)