BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0312.p
         (256 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095968|ref|YP_001101043.1| cell division protein FtsQ [Her...   357   e-100

>gi|134095968|ref|YP_001101043.1| cell division protein FtsQ
           [Herminiimonas arsenicoxydans]
          Length = 255

 Score =  357 bits (915), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 169/255 (66%), Positives = 202/255 (79%)

Query: 1   MWQDVKMLNAISSALFALVLLALLASGLWWVAQRPMFTLHTIRIESASDLPLEKVNALTV 60
           MWQD+KMLNA ++ALF LV LAL+++ LWWVAQRP FTL  I IE A    L  +N LTV
Sbjct: 1   MWQDIKMLNATANALFGLVALALISACLWWVAQRPYFTLKVIHIEGAEQAQLRHINPLTV 60

Query: 61  RATAVPRIHGNFFTADLTAVRAAFEAVPWVRKAMVRREWPDRLVVKIEEHKALGTWGEDG 120
           R+TA+ RI GNFFTA+L +VR AFEAVPWVRKA VRREWP+RL V +EEH  LGTWGEDG
Sbjct: 61  RSTALSRIKGNFFTANLESVRQAFEAVPWVRKATVRREWPNRLTVTLEEHTPLGTWGEDG 120

Query: 121 KLLSQKGDVFTANLAEAEDDGDLLEFDGPPGSEKQVVARLAQFRQWFAPIKLEPESVVLS 180
           +LLS KGDVFTANLAEAE+D +LL F+GPPGSEK+VVARL     WFAPI +   S+ LS
Sbjct: 121 RLLSTKGDVFTANLAEAEEDAELLAFNGPPGSEKEVVARLNDLNAWFAPIDVTAASLSLS 180

Query: 181 NRYAWTVRLDNGMTVELGREQGDAVLKERVARLVAVYPQLMERLQGKIESVDLRYPNGMA 240
            RYAWTV+L NG+TVELGRE+    LKERV RLV +YPQL+ RLQ +IES+D+RYPNG+A
Sbjct: 181 GRYAWTVKLSNGVTVELGREKSSTTLKERVERLVGIYPQLLARLQDRIESIDMRYPNGLA 240

Query: 241 LKADGLVLAAMNGKK 255
           L+A GL + + + KK
Sbjct: 241 LQAQGLKVGSESKKK 255


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 449,668
Number of extensions: 17167
Number of successful extensions: 47
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 1
Length of query: 256
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 176
Effective length of database: 736,747
Effective search space: 129667472
Effective search space used: 129667472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)