BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0309.p
         (360 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095971|ref|YP_001101046.1| undecaprenyldiphospho-muramoylp...   490   e-140

>gi|134095971|ref|YP_001101046.1|
           undecaprenyldiphospho-muramoylpentapeptide beta-N-
           acetylglucosaminyltransferase [Herminiimonas
           arsenicoxydans]
          Length = 358

 Score =  490 bits (1262), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 271/354 (76%), Positives = 298/354 (84%)

Query: 5   RKLLIMAAGTGGHIFPGLAIADTMRARGWQVSWLGTSHGMERELVPRHGVEMDSIVFAGL 64
           +KLLIMAAGTGGHIFPGLAIADTM+ARGW+V+WLGT HGMER+LVP+ G+ MD+I FAGL
Sbjct: 2   KKLLIMAAGTGGHIFPGLAIADTMQARGWEVTWLGTEHGMERDLVPKSGIAMDTISFAGL 61

Query: 65  RGKGLMHTLKGVWRLAASFLHCHAILGRRRPDVVLGMGGYVTVPGGMMARLRGKPLVLVN 124
           RGKGL HT+ GV RL ASF  C +IL RR+P VVLGMGGYVTVPGG MA+LRG PLVL+N
Sbjct: 62  RGKGLRHTVTGVLRLLASFGTCFSILARRKPGVVLGMGGYVTVPGGWMAKLRGVPLVLLN 121

Query: 125 ADAALLLSNKTLTPMATRVLFGFPADFGKAAGKAEVTGNPVRKEIIALPPPAQRYAGHSG 184
           ADAALLLSNK LTP+A RVLFGFPADFG AA KA VTGNPVR EI AL PPAQRYA HSG
Sbjct: 122 ADAALLLSNKALTPIAQRVLFGFPADFGNAADKALVTGNPVRAEISALMPPAQRYAQHSG 181

Query: 185 VLKILVVGGSLGAKVLNDNVPAALAKLPAELRPQVTHQSGKQHIAALRAAYEAAGVQAEV 244
            LKILVVGGSLGA+ LN  +PAALA +PAE RP VTHQSGK++I  LRA Y  AGV AEV
Sbjct: 182 ALKILVVGGSLGAQALNAALPAALALIPAEQRPLVTHQSGKKNIDDLRARYAQAGVTAEV 241

Query: 245 VDFIDDMPRRYAQADLVICRAGAITVSELTAAGVASVLVPLAVSTTSHQIDNARWMAENK 304
           VDFIDDMPRRYA ADLVICRAGAITVSELTAAGVASVLVPL VSTT+HQ DNA WM + +
Sbjct: 242 VDFIDDMPRRYADADLVICRAGAITVSELTAAGVASVLVPLLVSTTTHQRDNAHWMEQQQ 301

Query: 305 AAIHLPQRELTPEHLAGLLQKLDRAACQEMAQAAYEQGRRDANEAIARVLEGLV 358
           AAIHLPQ ELT + LA LLQ + R  C++MA+AAY  GRRDAN AIA VLE LV
Sbjct: 302 AAIHLPQSELTAQGLADLLQNMTREKCKQMAEAAYANGRRDANAAIADVLEKLV 355


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 723,695
Number of extensions: 30943
Number of successful extensions: 90
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 277
Effective length of database: 726,862
Effective search space: 201340774
Effective search space used: 201340774
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)