BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0308.p
         (421 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095972|ref|YP_001101047.1| essential cell division protein...   625   0.0  
gi|134093461|ref|YP_001098536.1| rod shape-determining protein r...   110   1e-25

>gi|134095972|ref|YP_001101047.1| essential cell division protein
           [Herminiimonas arsenicoxydans]
          Length = 386

 Score =  625 bits (1613), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/383 (85%), Positives = 358/383 (93%)

Query: 39  LEQRSRMMEYDQPLIWVVVLLMLFGMVMVYSASVALPDSPKYAAYSNYHFLVRQAIFIVL 98
           L+QRS+MM YDQPL+WVVVLLMLFGMVMVYSAS++LPDSPKYA Y N HF+ RQA+FI +
Sbjct: 4   LDQRSKMMAYDQPLVWVVVLLMLFGMVMVYSASISLPDSPKYARYDNAHFVTRQAMFISV 63

Query: 99  SIIAGALVFRVRIETWQKWAPYLFAVTLILLLLVLIPGVGKGVNGAKRWLSLKIINLQPS 158
           S+IAG L FRVR+ETWQK APYLF  TLILL+LVL+PGVGKGVNGA+RWLS K+ NLQPS
Sbjct: 64  SLIAGLLAFRVRMETWQKLAPYLFVATLILLVLVLVPGVGKGVNGARRWLSFKVFNLQPS 123

Query: 159 ELMKLFIVLYAADYTVRKQAVMHKLVKGFFPMAAAVGLVGLLLLLEPDLGAFGVIVCIAM 218
           ELMKLF+VLYAADYTVRKQ VMHKL KGF PM  A+G VGLLLLLEPDLGAFGVIVCIAM
Sbjct: 124 ELMKLFVVLYAADYTVRKQQVMHKLTKGFMPMTLAIGFVGLLLLLEPDLGAFGVIVCIAM 183

Query: 219 GILFLGGINGVWFGGIGATLVGVFSLVIVTSPWRRERIFAYLNPWEEDNALGKAYQLSHS 278
           GILFLGGING+WFGGIGATLVG+FS+VI+ SPWRRERIFAYLNPWEE+NALGKAYQLSHS
Sbjct: 184 GILFLGGINGIWFGGIGATLVGIFSMVILLSPWRRERIFAYLNPWEEENALGKAYQLSHS 243

Query: 279 LIAFGRGELFGVGLGSSVEKLHYLPEAHTDFLLAVIGEELGFAGVLVVVLLFYWLVKHAF 338
           LIAFGRGELFGVGLG SVEKLHYLPEAHTDFLLAVIGEELGF GV VV+ LFYW++K +F
Sbjct: 244 LIAFGRGELFGVGLGGSVEKLHYLPEAHTDFLLAVIGEELGFVGVFVVIALFYWIIKRSF 303

Query: 339 EIGRQAIALDLTFAGLVAKGIGIWLGVQAFINMGVNLGLLPTKGLTLPLMSYGGSGVLLN 398
           EIGRQAIA+DLTFAGLVAKGIGIW+GVQAFINMGVNLGLLPTKGLTLPLMSYGGSGVL+N
Sbjct: 304 EIGRQAIAMDLTFAGLVAKGIGIWIGVQAFINMGVNLGLLPTKGLTLPLMSYGGSGVLIN 363

Query: 399 CVGLAILLRIDYENRVLMRGGRL 421
           C+GLAILLRIDYENRVLMRGGR+
Sbjct: 364 CIGLAILLRIDYENRVLMRGGRI 386


>gi|134093461|ref|YP_001098536.1| rod shape-determining protein rodA
           [Herminiimonas arsenicoxydans]
          Length = 321

 Score =  110 bits (276), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/304 (31%), Positives = 163/304 (53%), Gaps = 23/304 (7%)

Query: 122 FAVTLILLLLVLIPGV---GKGVNGAKRWLSLKIINLQPSELMKLFIVLYAADYTVRKQA 178
           FAV L +L + L+ GV   G   NGA+RW+++ +I +QPSE+MK+ + +  A +  +++ 
Sbjct: 29  FAVPLYILGISLLIGVAMFGLIRNGARRWINVGMI-IQPSEIMKIAMPMMLAWFFQKREG 87

Query: 179 VM---HKLVKGFFPMAAAVGLVGLLLLLEPDLGAFGVIVCIAMGILFLGGINGVWFGGIG 235
           +      LV G   +   VGL+    + +PDLG   +++     ++F  G++  W   + 
Sbjct: 88  MTRWREFLVAGLL-LVVPVGLI----MRQPDLGTSLLVMAAGFYVIFFAGLS--WKVIVA 140

Query: 236 ATLVGVFSLVIVTS---PWRRERIFAYLNPWEEDNALGKAYQLSHSLIAFGRGELFGVG- 291
           A  V + SL +V S    ++R R+   ++P    + LGK + +  S IA G G + G G 
Sbjct: 141 AVTVMLASLPVVWSMMHDYQRGRVLTLIDP--TTDPLGKGFHIIQSTIAIGSGGITGKGW 198

Query: 292 LGSSVEKLHYLPEAHTDFLLAVIGEELGFAGVLVVVLLFYWLVKHAFEIGRQAIALDLTF 351
           L  +   L ++PE  TDF+ AV  EE G  G  ++++L+  L+  +  I   A  L   F
Sbjct: 199 LNGTQAHLEFIPERTTDFIFAVFSEEFGLIGNGILLVLYLLLIGRSMLIAANAPTL---F 255

Query: 352 AGLVAKGIGIWLGVQAFINMGVNLGLLPTKGLTLPLMSYGGSGVLLNCVGLAILLRIDYE 411
           + L+A  I +     AF+NMG+  G+LP  G+ LP +SYGG+  +   +G+ IL+ I   
Sbjct: 256 SRLLAGAITMIFFTYAFVNMGMVSGILPVVGVPLPFVSYGGTAFVTLGLGVGILMSIQRH 315

Query: 412 NRVL 415
            +++
Sbjct: 316 RKLM 319


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.328    0.145    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 654,384
Number of extensions: 22424
Number of successful extensions: 106
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 2
Length of query: 421
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 337
Effective length of database: 723,567
Effective search space: 243842079
Effective search space used: 243842079
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 130 (54.7 bits)