BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0301.p
         (327 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095979|ref|YP_001101054.1| S-adenosyl-methyltransferase Mr...   491   e-140

>gi|134095979|ref|YP_001101054.1| S-adenosyl-methyltransferase MraW
           [Herminiimonas arsenicoxydans]
          Length = 321

 Score =  491 bits (1263), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 240/314 (76%), Positives = 273/314 (86%)

Query: 1   MNLQPVPELQHRTVLLDEAVEALAITGARANGIYLDGTFGRGGHSRAILSRLGPQGRLIA 60
           MN++ V + QHRTVLL+EAV+ALA+ G RANG+Y+DGTFGRGGHSR IL RLG  G L+A
Sbjct: 1   MNVEAVQQYQHRTVLLEEAVDALALDGERANGMYVDGTFGRGGHSRLILQRLGENGCLLA 60

Query: 61  FDKDPLAIATAQKIADARFEIVHDSFATMDEALAARGIAQVDGVLMDLGISSPQVDDAAR 120
           FDKD  AIA A  I D RF IVHDSFAT+  ALA RGIAQV+GVL+DLGISSPQVDDAAR
Sbjct: 61  FDKDTQAIANAATIEDKRFAIVHDSFATLSTALAERGIAQVNGVLLDLGISSPQVDDAAR 120

Query: 121 GFSFRLDGPLDMRMDTTRGVSAADWLATADEQQIAKVIRDYGEERFALQIAKKIVAGRAI 180
           GFSFR DGPLDMRMDTTRG+SAA+WLAT  EQ+I KVIR+YGEERFA QIAK IVAGRA+
Sbjct: 121 GFSFRADGPLDMRMDTTRGISAAEWLATETEQKIEKVIREYGEERFAFQIAKAIVAGRAV 180

Query: 181 EPISSTRQLAALVAQAVKTREKGKDPATRTFQAVRIFVNQELEELEVGLDKAFAQMAQHG 240
           +PISSTRQLA +VA+AVKTREKGKDPATRTFQA+RIF+NQELEELEV L++A+  +A HG
Sbjct: 181 QPISSTRQLAEIVARAVKTREKGKDPATRTFQAIRIFINQELEELEVVLNEAYRHLAPHG 240

Query: 241 RLVVISFHSLEDRIVKQFMASKAHAPQPDRRLPIRAVDLPQAPARLLPRVMPSAAEVESN 300
           RLVVISFHSLEDRIVKQFMASKA+ PQPDRRLPIRAVDLPQ   +L+ R+ PSAAE+ +N
Sbjct: 241 RLVVISFHSLEDRIVKQFMASKANVPQPDRRLPIRAVDLPQPEMKLIARIKPSAAEISAN 300

Query: 301 PRARSAVMRGLERV 314
           PRARSAVMR  ER+
Sbjct: 301 PRARSAVMRVAERL 314


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.134    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 590,893
Number of extensions: 23605
Number of successful extensions: 98
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 245
Effective length of database: 730,157
Effective search space: 178888465
Effective search space used: 178888465
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)