BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0300.p
         (142 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095980|ref|YP_001101055.1| cell division protein MraZ [Her...   239   3e-65

>gi|134095980|ref|YP_001101055.1| cell division protein MraZ
           [Herminiimonas arsenicoxydans]
          Length = 142

 Score =  239 bits (611), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 108/142 (76%), Positives = 126/142 (88%)

Query: 1   VFQGASALNLDAKGRMTIPAKHRDALIVQCEGRATVTRHPHGCLLFFPRPTWETHREQIA 60
           +FQGAS+LNLDAKGRMTIPA+HRDAL++QCEGR T+T+HP GCLL FPRP WE  RE+IA
Sbjct: 1   MFQGASSLNLDAKGRMTIPARHRDALLLQCEGRITLTKHPDGCLLLFPRPVWEMRREEIA 60

Query: 61  NWPMSARAWQRIFLGNAQDVELDSAGRILIAPELRAAVGLQRDVMLLGMGSHFEIWDAVK 120
            WP+SARAWQRIFLGNA DV+ D AGRILIAPELR A GL RDVM++GMG HFEIWDA +
Sbjct: 61  KWPISARAWQRIFLGNASDVDFDGAGRILIAPELRTAAGLTRDVMMMGMGGHFEIWDAAR 120

Query: 121 LAESEAEAVAGGMPDVLSNFSF 142
           LAESE++A+A GMPDVL++FSF
Sbjct: 121 LAESESDAIAAGMPDVLNDFSF 142


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.136    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 281,689
Number of extensions: 10342
Number of successful extensions: 36
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 1
Length of query: 142
Length of database: 1,000,347
Length adjustment: 73
Effective length of query: 69
Effective length of database: 759,812
Effective search space: 52427028
Effective search space used: 52427028
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 124 (52.4 bits)