BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0299.p
         (115 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094955|ref|YP_001100030.1| DNA-binding protein HU-beta [He...   108   7e-26
gi|134095000|ref|YP_001100075.1| integration host factor subunit...    62   7e-12

>gi|134094955|ref|YP_001100030.1| DNA-binding protein HU-beta
           [Herminiimonas arsenicoxydans]
          Length = 90

 Score =  108 bits (270), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 57/90 (63%), Positives = 67/90 (74%)

Query: 22  VNKSELVDVIAADTEISKAAAQRALDSVIENIIKAVTKGDTVQLVGFGSFSTGKRAARTG 81
           +NK+EL+D IA   +ISKAAA RALD+VI  +   + K  TV LVGFG+FS GKRAARTG
Sbjct: 1   MNKTELIDHIAGSADISKAAATRALDAVIVAVKTTLKKNGTVTLVGFGTFSVGKRAARTG 60

Query: 82  RNPQTGEEIKIAAATTVKFSAGKAFKEAVN 111
           RNP+TGE IKI AA   KF  GKA K+AVN
Sbjct: 61  RNPRTGEAIKIKAAKVPKFKPGKALKDAVN 90


>gi|134095000|ref|YP_001100075.1| integration host factor subunit
           alpha [Herminiimonas arsenicoxydans]
          Length = 151

 Score = 62.0 bits (149), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 51/89 (57%)

Query: 22  VNKSELVDVIAADTEISKAAAQRALDSVIENIIKAVTKGDTVQLVGFGSFSTGKRAARTG 81
           + K+EL +++     ++K  A+  +++  + I  A+ +G+ V+L GFG+F    +  R G
Sbjct: 51  LTKAELAELLFEQVGLNKREAKDMVETFFDEIRNALERGEAVKLSGFGNFQLRDKPQRPG 110

Query: 82  RNPQTGEEIKIAAATTVKFSAGKAFKEAV 110
           RNP+TGEEI I A   V F A +  K  V
Sbjct: 111 RNPKTGEEIPITARRVVTFHASQKLKSMV 139


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.313    0.128    0.331 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 165,996
Number of extensions: 5227
Number of successful extensions: 29
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 2
Length of query: 115
Length of database: 1,000,347
Length adjustment: 70
Effective length of query: 45
Effective length of database: 769,697
Effective search space: 34636365
Effective search space used: 34636365
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 123 (52.0 bits)