BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0293.p
         (335 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096464|ref|YP_001101539.1| putative oxidoreductase [Hermin...    97   2e-21

>gi|134096464|ref|YP_001101539.1| putative oxidoreductase
           [Herminiimonas arsenicoxydans]
          Length = 277

 Score = 96.7 bits (239), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/310 (30%), Positives = 135/310 (43%), Gaps = 55/310 (17%)

Query: 9   SNLKVSALCLGSMMFGDQTDLQESGRIIASAR---EHGVNFIDTADVYTKGKSEEIVGKL 65
           S   V  L  G+   GD          IA+ R   + G+  IDTA++Y  G SE++VG+ 
Sbjct: 8   SGEAVPVLGQGTWYMGDHA--SRRAEEIATLRLGLDFGMTLIDTAEMYGDGASEKLVGEA 65

Query: 66  LAGQRHEWVLASKLGNAMSGKPNESHYSRSWIVRETENSLKRLDTDYLDILYMHRDYQDE 125
           +AG+R E  L SK+          S+ +R   +   E SLKRL TD +D+  +H   +  
Sbjct: 66  IAGRRDEVFLVSKV--------LPSNATRHGTIAACERSLKRLGTDRIDLYLLHWRGR-T 116

Query: 126 NLEEAVQALGDLIRAGKIRGFGVSNFRGWRIAEIVRLCEKNNVPLPLVCQPYYNLLNRQP 185
              E + A   L  AGKIR +GVSN     + EI R      V    V Q  YNL  R  
Sbjct: 117 PFAETIAAFEALQDAGKIRHWGVSNMDVDDMREIARASGGEAV---AVNQVLYNLTRRGI 173

Query: 186 EVEILPACAHYGLGVVPYSPIARGVLTGKYQPGQKPPEDTRAGRGDKRMMETEFREESLL 245
           E ++LP     GL ++ YSPI +G LT       + PE                      
Sbjct: 174 EYDLLPQAQQRGLPIMAYSPIEQGRLT-------ESPE---------------------- 204

Query: 246 IAQRLQQHCEVRGIKLGQFATAWVLANAAISSVIAGPR--TLAQMEDYYDAAELQITAEE 303
               +Q   +  G    Q A AWVL       VIA P+  T A ++    A ++++TA++
Sbjct: 205 ----VQDIADRHGASPAQIALAWVLRQ---PGVIAIPKASTPAHVQQNRAALDIKLTAQD 257

Query: 304 EALVDSLVRP 313
            A +D    P
Sbjct: 258 LAELDDTFPP 267


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.136    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 662,594
Number of extensions: 27236
Number of successful extensions: 70
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 253
Effective length of database: 730,157
Effective search space: 184729721
Effective search space used: 184729721
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)