BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0291.p (337 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095507|ref|YP_001100582.1| putative transcriptional regula... 229 2e-61 gi|134094015|ref|YP_001099090.1| LysR family transcriptional reg... 184 4e-48 gi|134093609|ref|YP_001098684.1| putative transcriptional regula... 166 2e-42 gi|134094924|ref|YP_001099999.1| transcriptional regulator [Herm... 143 1e-35 gi|134094407|ref|YP_001099482.1| transcriptional regulator [Herm... 115 3e-27 >gi|134095507|ref|YP_001100582.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 287 Score = 229 bits (583), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 116/289 (40%), Positives = 173/289 (59%), Gaps = 2/289 (0%) Query: 7 MQVFTAVVDANSFTRAADNLNLPRTTVTTLIQGLESLLQVRLLNRTTRRISLTPDGAAYY 66 M+ F AVV+A SFT A L++ + V+ + LE L RLLNRTTRR+SLT G AYY Sbjct: 1 MKTFVAVVEAESFTAAGARLDISKALVSKYVGILEDHLGTRLLNRTTRRLSLTESGLAYY 60 Query: 67 ERCVRILADVDETEQSFRNVTRGPQGRLRIDVPGSIGRLMLLPNLCDFYTKYPDIELLMG 126 ERC++ILADVDE EQ P+G L++ +P S G + + P L ++ +YP++ L + Sbjct: 61 ERCLQILADVDEAEQVAAQSAAMPRGTLKVAMPVSFGTVRIAPLLTEYMRRYPEVRLDIA 120 Query: 127 MGDRPVDLVQEAVDCVIRIGQLQDSSMVARRIGTFQTVTCAAPSYLERHGVPHTLDDLQQ 186 + DR VDL+++ D IR+G L +S ++AR++ T + V CA+P+YL+ HG P T +DL+Q Sbjct: 121 LADRRVDLIEDGYDLAIRVGNLPESGLIARKLATDRIVLCASPAYLQVHGAPQTPEDLKQ 180 Query: 187 HKAVHYFSSRTGRTIDWDFVVDGVSREVKMDGKLSVNDADAYVECALQGFGMVQAPLYMV 246 H ++Y S +G +W F V++DG + N+ D AL G G++ P ++V Sbjct: 181 HACLNYSYSSSGD--EWVFGKGKTRAAVRVDGPMRANNGDMLRLAALDGAGLIWQPHFIV 238 Query: 247 TRHIDEGRLVEVLSQWKPAPLPISVVYLHNRHLSPKVRAFVDWVAELFA 295 + GRLVE++ L I +Y +HLS KVR FVD++ A Sbjct: 239 ADDVQAGRLVELMKDESDTELGIYAIYPSRKHLSAKVRTFVDYLVACMA 287 >gi|134094015|ref|YP_001099090.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 305 Score = 184 bits (468), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 105/296 (35%), Positives = 156/296 (52%), Gaps = 1/296 (0%) Query: 1 MDRFQAMQVFTAVVDANSFTRAADNLNLPRTTVTTLIQGLESLLQVRLLNRTTRRISLTP 60 MD + F +V S AA L + +V+ + G+E+ L+VRLLNRTTRRISLTP Sbjct: 1 MDGISDLAFFALLVKRGSLAAAAQELGVTPPSVSKRLAGIEARLRVRLLNRTTRRISLTP 60 Query: 61 DGAAYYERCVRILADVDETEQSFRNVTRGPQGRLRIDVPGSIGRLMLLPNLCDFYTKYPD 120 +G Y R++A+++ EQ +G L+I GR + P L F YP+ Sbjct: 61 EGEIYLADGARLVAELEALEQRISGGNVTAKGLLKISATFGFGRRHITPQLSAFARLYPE 120 Query: 121 IELLMGMGDRPVDLVQEAVDCVIRIGQLQDSSMVARRIGTFQTVTCAAPSYLERHGVPHT 180 +++ + + DRPV+LV++ D IR GQL D+ + AR+I + + CA+P+YL+ HG+P T Sbjct: 121 VDVQLHLTDRPVNLVEQGFDADIRFGQLPDARLTARKIADNRRLVCASPAYLKNHGIPLT 180 Query: 181 LDDLQQHKAVHYFSSRTGRTIDWDFVVDGVSREVKMDGKLSVNDADAYVECALQGFGMVQ 240 DLQ+H + S W F VK+ G LS ND + AL G G+V Sbjct: 181 PRDLQKHNCILLRESDEIYG-SWHFSSGTKQETVKVRGSLSANDGECATAWALDGQGIVV 239 Query: 241 APLYMVTRHIDEGRLVEVLSQWKPAPLPISVVYLHNRHLSPKVRAFVDWVAELFAT 296 + V ++ GRL VL W+ I +V+ HLS K RA VD++ + F + Sbjct: 240 RSEWDVAPYLRSGRLRTVLEDWQLPQADIYIVFPTKNHLSAKTRALVDFMLQAFES 295 >gi|134093609|ref|YP_001098684.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 301 Score = 166 bits (419), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 94/295 (31%), Positives = 151/295 (51%), Gaps = 1/295 (0%) Query: 1 MDRFQAMQVFTAVVDANSFTRAADNLNLPRTTVTTLIQGLESLLQVRLLNRTTRRISLTP 60 MD+ + ++ F V+ +SF AA L + V I LE L VRLL+R+TRR++LT Sbjct: 1 MDKLKQIEAFVMAVEHSSFAAAALALQVTPVMVGRRIDALEKRLGVRLLHRSTRRLALTE 60 Query: 61 DGAAYYERCVRILADVDETEQSFRNVTRGPQGRLRIDVPGSIGRLMLLPNLCDFYTKYPD 120 +G+ Y E C ++L+++D+ E + G L I P S GR + P +F ++P Sbjct: 61 EGSVYLEHCRKMLSELDQAESTLSAGHNKVSGHLIISAPASFGRQHVAPYAQNFLEQHPG 120 Query: 121 IELLMGMGDRPVDLVQEAVDCVIRIGQLQDSSMVARRIGTFQTVTCAAPSYLERHGVPHT 180 +++ + DR VDLVQE D IRIG D + VA ++ + V C P Y ++HG P T Sbjct: 121 LKMSFNLTDRVVDLVQEGYDMGIRIGGTIDPNFVAIKLAANKRVVCGTPDYFKKHGKPKT 180 Query: 181 LDDLQQHKAVHYFSSRTGRTIDWDFVVDGVSREVKMDGKLSVNDADAYVECALQGFGMVQ 240 LDDL +H + F+ + G+ W F G + V+ G L ND + +G G+ Sbjct: 181 LDDLAKHNCL-AFNLQGGQQRGWYFNHRGKTVSVRAQGSLDCNDGELLHRWMSEGLGIAW 239 Query: 241 APLYMVTRHIDEGRLVEVLSQWKPAPLPISVVYLHNRHLSPKVRAFVDWVAELFA 295 ++ + ++ G L VL + I VY R++ KVR F+ + +++ Sbjct: 240 RSVWEIQSQLESGTLETVLDDFAIPEYDIMAVYPQQRNVPAKVRLFISHLKTMYS 294 >gi|134094924|ref|YP_001099999.1| transcriptional regulator [Herminiimonas arsenicoxydans] Length = 293 Score = 143 bits (361), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 90/287 (31%), Positives = 142/287 (49%), Gaps = 4/287 (1%) Query: 7 MQVFTAVVDANSFTRAADNLNLPRTTVTTLIQGLESLLQVRLLNRTTRRISLTPDGAAYY 66 ++ F AV+D+ + AA +L + V+ + LE L LL RTTRR+ LT +G + Sbjct: 8 LKTFVAVIDSGTLGAAAQHLGQTTSAVSRGLSRLEEKLATSLLTRTTRRMELTDEGRLFL 67 Query: 67 ERCVRILADVDETEQSFRNVTRGPQGRLRIDVPGSIGRLMLLPNLCDFYTKYPDIELLMG 126 ++ ILA +DE E++ R + P GRLRID ++P++ +F YP I L + Sbjct: 68 KKARAILAAMDEAEEAIRVRRQQPSGRLRIDAAAPFILHAIVPHVAEFRALYPQITLELT 127 Query: 127 MGDRPVDLVQEAVDCVIRIGQLQDSSMVARRIGTFQTVTCAAPSYLERHGVPHTLDDLQQ 186 D+ DL++ D IRIG LQDS++ AR + A+P YL+RHG+P T + L Sbjct: 128 SNDQVADLLEHRTDIAIRIGNLQDSTLHARALTANPLHLLASPDYLQRHGMPTTPEQLAG 187 Query: 187 HKAVHYFSSRTGRTIDWDFVVDGVSREVKMDGKLSVNDADAYVECALQGFGMVQAPLYMV 246 H+ + + +G T W G + + L + + AL G G+ YM Sbjct: 188 HQLLGFLQFESGNT--WPIRHAG-GEGLTVTPALFASSGETLRALALHGQGIASLADYMT 244 Query: 247 TRHIDEGRLVEVLSQWKPA-PLPISVVYLHNRHLSPKVRAFVDWVAE 292 I GRLV +L + I VY N LS ++ F++++ + Sbjct: 245 RDDIAAGRLVRILENYYTGYRQQIHAVYYRNTQLSRRISCFLEFLQQ 291 >gi|134094407|ref|YP_001099482.1| transcriptional regulator [Herminiimonas arsenicoxydans] Length = 304 Score = 115 bits (289), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 88/298 (29%), Positives = 135/298 (45%), Gaps = 7/298 (2%) Query: 1 MDRFQAMQVFTAVVDANSFTRAADNLNLPRTTVTTLIQGLESLLQVRLLNRTTRRISLTP 60 ++R + +++F A DA+SF AA L +T ++ LE + L +R TR I +T Sbjct: 2 LNRLEMLRLFCAAADASSFKEAAARLGTSPQAITRAVKELEEAVGELLFHRNTRGIQITE 61 Query: 61 DGAAYYERCVRILADVDETEQSFRNVT-RGPQGRLRIDVPGSIGRLMLLPNLCDFYTKYP 119 G E ++ VD+ ++ +G +RI P IGR LL L +YP Sbjct: 62 FGTQLAEHAREMVTGVDKLFHHTNPLSDTNLEGLVRITAPSPIGRRHLLKLLLPLIRQYP 121 Query: 120 DIELLMGMGDRPVDLVQEAVDCVIRIGQLQDSSMVARRIGTFQTVTCAAPSYLERHGVPH 179 I+L +G+ + D+V + +D +RIG L+DS +VAR +G A P + G P Sbjct: 122 GIKLELGVTNLLADVVDKKIDIGVRIGPLRDSRLVARSVGKVSFFVVATPELVATRGKPI 181 Query: 180 TLDDLQQHKAVHYFSSRTGRTIDWDFVVDGVSREVKMDGKLSVNDADAYVEC--ALQGFG 237 T DL TGR W F S+ + + V+D D VEC L G G Sbjct: 182 TPQDLLGLPTTALMDGNTGRIWPWYF---ADSQPLTLTSPTLVSD-DPEVECDAVLAGIG 237 Query: 238 MVQAPLYMVTRHIDEGRLVEVLSQWKPAPLPISVVYLHNRHLSPKVRAFVDWVAELFA 295 Q + HI GRLV VL ++P P + V + ++R D + E+ + Sbjct: 238 YGQLSNHQAEPHIRSGRLVTVLDDYQPVPWDLYVYRPQRGPVPARIRLVFDRIVEILS 295 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.323 0.137 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 606,236 Number of extensions: 23778 Number of successful extensions: 82 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 73 Number of HSP's successfully gapped: 11 Length of query: 337 Length of database: 1,000,347 Length adjustment: 82 Effective length of query: 255 Effective length of database: 730,157 Effective search space: 186190035 Effective search space used: 186190035 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)