BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0289.p (398 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095879|ref|YP_001100954.1| acridine efflux pump protein [H... 154 7e-39 gi|134094274|ref|YP_001099349.1| hypothetical protein HEAR1042 [... 134 1e-32 gi|134095558|ref|YP_001100633.1| acridine efflux pump protein [H... 123 2e-29 gi|134094772|ref|YP_001099847.1| hypothetical protein HEAR1556 [... 71 1e-13 gi|134093794|ref|YP_001098869.1| hypothetical protein HEAR0533 [... 63 2e-11 >gi|134095879|ref|YP_001100954.1| acridine efflux pump protein [Herminiimonas arsenicoxydans] Length = 407 Score = 154 bits (389), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 109/320 (34%), Positives = 170/320 (53%), Gaps = 9/320 (2%) Query: 69 GRIEAVDRVEVRPLVGGTLTAVHFKDGALVKKGDLLFTIDPRPYEAEVARAEAQLAGAEA 128 GR+E+ E+R V G + F++G+ VK G LF IDP ++A A A +A AEA Sbjct: 56 GRLESTRIAEIRARVPGVVLKRTFREGSDVKAGATLFLIDPAQFKATYNSANAAVARAEA 115 Query: 129 RAGYTASDLARGQRLLGDNAIAKRDFEEKQNASREAVANVAAARAALRAARLNLEYTRIT 188 R + L+ NAI+K+++++ ++A A++AA++AA ARL+L+Y +T Sbjct: 116 TLLQAELKEKRYKPLVATNAISKQEYDDVTATLKQAEADLAASKAARETARLSLDYATVT 175 Query: 189 APVSGRISRAEVTVGNVVNPGAGNAPLTTLVSVAKVYASFDVDEQSFLKYVN-----PAR 243 +P+SGRI RA VT G +V PL T+ + +Y + L+ + Sbjct: 176 SPISGRIGRALVTEGALVGQNEAT-PLATVQQIDPIYVNMTQSSTEILQLQRALADGKLK 234 Query: 244 AAGTTVPVELGLANEDG--YSRQGRVGSVDNRLDTASGTIRVRAIFDNADGQLVPGLYAR 301 +AG V++ L EDG Y++ G++ D +D +SG I +RA F N D QL+PG+Y R Sbjct: 235 SAGKG-QVKVTLVTEDGQEYAQPGKLLFSDLTVDASSGAITLRAEFPNPDSQLLPGMYVR 293 Query: 302 VRLGGGSPHAAVLIDEKAIGTDQDKRFVMVADKNNHASYRQVVVGAGHDGLVVIEKGLQP 361 R+ A+ + ++AI D VMV N R V GA VI GL+ Sbjct: 294 ARVEQAINENAITVPQQAISRTPDGAAVMVVSAENTVVSRPVTTGAASGDSWVISDGLKD 353 Query: 362 GERIVVNGLQRIRPGDAITP 381 G++++V GLQ+I+PG + P Sbjct: 354 GDQVIVEGLQKIKPGATVKP 373 >gi|134094274|ref|YP_001099349.1| hypothetical protein HEAR1042 [Herminiimonas arsenicoxydans] Length = 382 Score = 134 bits (336), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 109/364 (29%), Positives = 177/364 (48%), Gaps = 14/364 (3%) Query: 23 LSVGGAISVVGLSANATTAPTAAAAGAPVDVAEVVQRQIIDWQSYS------GRIEAVDR 76 L +G I V+GL A T+ P D ++V+ + + ++ S G + A++ Sbjct: 8 LLIGAGIVVLGLIAYFGLRDTSERNKKP-DNIQIVKTALAEQKTISIKAFANGYVTAINT 66 Query: 77 VEVRPLVGGTLTAVHFKDGALVKKGDLLFTIDPRPYEAEVARAEAQLAGAEARAGYTASD 136 V+VRP V + +H ++G VK G LLFT+D R ++ VA+A+A+LA ++ Sbjct: 67 VDVRPKVQNIVRTIHVREGQFVKAGQLLFTLDERSDQSNVAKAQAELAAGQSDLADAELA 126 Query: 137 LARGQRLLGDNAIAKRDFEEKQNASREAVANVAAARAALRAARLNLEYTRITAPVSGRIS 196 L R + LL N +++ + +N A RA ++ + L RI A +SGRI Sbjct: 127 LKRNEDLLSRNFVSQAVVDTARNKVAALRNTSKANRAIAESSNITLSDNRIAASISGRIG 186 Query: 197 RAEVTVGNVVNPGAGNAPLTTLVSVAKVYASFDVDEQSFLKYVNPARAAGTTVPVELGLA 256 V G++ P P+ T+ + + SF + E+ L + G PV L Sbjct: 187 IISVHPGSLAQPSGD--PMVTISQLDPIAVSFTLPERE-LANITATYPQGNA-PVTARLP 242 Query: 257 NEDGYSRQGRVGSVDNRLDTASGTIRVRAIFDNADGQLVPGLYARVRLGGGSPHAAVLID 316 + + G++ +DN DT SGTIR++A FDNA +L PG + V L + AVL+ Sbjct: 243 GQPEMT--GKLIFIDNAADTQSGTIRMKAQFDNAAQKLWPGSFVNVSLVSRNVSHAVLVP 300 Query: 317 EKAIGTDQDKRFVMVADKNNHASYRQVVVGAGHDGLVVIEKGLQPGERIVVNGLQRIRPG 376 +A+ T +F+ V + ++V V A +G + GL G R+VV G Q +RPG Sbjct: 301 AQAVVTGPIDKFIYVVQPDATVKEQKVDVVAIEEGQAAV-IGLDAGARVVVEGTQNLRPG 359 Query: 377 DAIT 380 I+ Sbjct: 360 SKIS 363 >gi|134095558|ref|YP_001100633.1| acridine efflux pump protein [Herminiimonas arsenicoxydans] Length = 403 Score = 123 bits (308), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 101/313 (32%), Positives = 160/313 (51%), Gaps = 6/313 (1%) Query: 69 GRIEAVDRVEVRPLVGGTLTAVHFKDGALVKKGDLLFTIDPRPYEAEVARAEAQLAGAEA 128 GR A EVRP V G + F +GA VK G L+ +D Y+A A A+A LA A+A Sbjct: 58 GRTNAFLVAEVRPQVNGIIKKRLFTEGAQVKAGQPLYQLDDAIYQANYASAKAALARAQA 117 Query: 129 RAGYTASDLARGQRLLGDNAIAKRDFEEKQNASREAVANVAAARAALRAARLNLEYTRIT 188 + R L+ +A++++D E + A ++ A+VAAA+AAL++ + L Y +IT Sbjct: 118 TLKSAELNATRTAELVKIDAVSRQDNENAEAALSQSKADVAAAQAALQSNSVTLGYAQIT 177 Query: 189 APVSGRISRAEVTVGNVVNPGAGNAPLTTLVSVAKVYASFDVDEQSFLKYVNPARAAGTT 248 +P++GRI ++ VT G +V A L T+ + VY L+ A T Sbjct: 178 SPITGRIGKSSVTQGALVTANQA-AALATVQQLNPVYIDLTQSSSELLQLRKELAAGRLT 236 Query: 249 ----VPVELGLANEDGYSRQGRVGSVDNRLDTASGTIRVRAIFDNADGQLVPGLYARVRL 304 +PV++ L + Y G++ D +D +G+ +R N D L+PG+Y R + Sbjct: 237 QSGNLPVQIVLEDGSRYQHDGKLAFADVTVDPGTGSFALRVTVPNPDNILMPGMYVRALI 296 Query: 305 GGGSPHAAVLIDEKAIGTD-QDKRFVMVADKNNHASYRQVVVGAGHDGLVVIEKGLQPGE 363 G G A+L+ ++ I D + MV DK+ + R V V ++E GL G+ Sbjct: 297 GNGVRQNAILVPQQGIARDPKGNTSAMVVDKDGKVALRPVSVSRTIGDKWLVEDGLAAGD 356 Query: 364 RIVVNGLQRIRPG 376 R++V GLQ+I+PG Sbjct: 357 RVIVAGLQKIKPG 369 >gi|134094772|ref|YP_001099847.1| hypothetical protein HEAR1556 [Herminiimonas arsenicoxydans] Length = 497 Score = 70.9 bits (172), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 64/210 (30%), Positives = 102/210 (48%), Gaps = 15/210 (7%) Query: 183 EYTRITAPVSGRISRAEVTVGNVVNPGAGNAPLTTLVSVAKVYASFDVDEQSFLKYVNPA 242 +Y +T+PV+G I+ V G +V PG A + L +KV+ +V E N Sbjct: 216 KYFTLTSPVTGVITELSVRDGAMVTPGMTIAKVAGL---SKVWLVAEVPE----ALSNAV 268 Query: 243 RAAGTTVPVELGLANEDGYSRQGRVGSVDNRLDTASGTIRVRAIFDNADGQLVPGLYARV 302 R+ T VE + + G+V + + TA+ T++ R DN DG L PG+ R+ Sbjct: 269 RSGMT---VEATFSGDANRKYSGKVREILPGISTATRTLQARLELDNRDGSLTPGMLMRI 325 Query: 303 RLGGGSPHAAVLIDEKAIGTDQDKRFVMVADKNNHASYRQVVVGAGHDG--LVVIEKGLQ 360 RL P + +L+ +A+ + + V+VA NN S + VVV G D I GL Sbjct: 326 RLDAEKPVSRLLVPSEAVIANGKQSIVLVAGANN--SMQPVVVTTGRDSGNDTEILSGLS 383 Query: 361 PGERIVVNGLQRIRPGDAITPTVVPMQAQT 390 G+++V +G Q + +A +V+P A T Sbjct: 384 EGQKVVASG-QFLIDSEASLKSVLPKFADT 412 >gi|134093794|ref|YP_001098869.1| hypothetical protein HEAR0533 [Herminiimonas arsenicoxydans] Length = 500 Score = 63.2 bits (152), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 70/244 (28%), Positives = 112/244 (45%), Gaps = 31/244 (12%) Query: 168 VAAARAALRAARL-------------NLEYTRITAPVSGRISRAEVTVGNVVNPGAGNAP 214 +AAAR +RA + + ++ +T+PV+G I+ V G +V PG A Sbjct: 191 MAAARQRMRAMSIPDGLINQADRTGQSQQHFTLTSPVTGVITELSVRDGAMVAPGMTIAK 250 Query: 215 LTTLVSVAKVYASFDVDEQSFLKYVNPARAAGTTVPVELGLANEDGYSRQGRVGSVDNRL 274 + L KV+ +V E N R+ T VE + + G+V + + Sbjct: 251 VAGL---NKVWLVAEVPE----ALSNVVRSGMT---VEATFSGDANRKYSGKVREILPGI 300 Query: 275 DTASGTIRVRAIFDNADGQLVPGLYARVRLGGGSPHAAVLIDEKAIGTDQDKRFVMVADK 334 TA+ T++ R DN DG L PG+ RVRL + +L+ +A+ + + V+V + Sbjct: 301 STATRTLQARLELDNRDGSLTPGMLMRVRLNADKSVSKLLVPSEAVIANGKQSIVLVVGE 360 Query: 335 NNHASYRQVVVGAGHD--GLVVIEKGLQPGERIVVNGLQRIRPGDAITPTVVPMQA---Q 389 NN S + VVV G D I GL G+++V +G Q + +A +V+P A Q Sbjct: 361 NN--SMQPVVVTIGRDIGSDTEILNGLSDGQKVVASG-QFLIDSEASLKSVLPKFAGTKQ 417 Query: 390 TTAP 393 T P Sbjct: 418 TMQP 421 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.316 0.132 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 658,574 Number of extensions: 25268 Number of successful extensions: 118 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 108 Number of HSP's successfully gapped: 9 Length of query: 398 Length of database: 1,000,347 Length adjustment: 84 Effective length of query: 314 Effective length of database: 723,567 Effective search space: 227200038 Effective search space used: 227200038 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)