BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0287.p (504 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095881|ref|YP_001100956.1| outer membrane transport protei... 213 2e-56 gi|134095761|ref|YP_001100836.1| putative outer membrane transpo... 206 2e-54 gi|134094170|ref|YP_001099245.1| putative outer membrane protein... 192 3e-50 gi|134095560|ref|YP_001100635.1| outer membrane transport protei... 190 2e-49 gi|134095533|ref|YP_001100608.1| putative RND efflux system, out... 172 2e-44 >gi|134095881|ref|YP_001100956.1| outer membrane transport protein involved in copper (silver) tolerance [Herminiimonas arsenicoxydans] Length = 474 Score = 213 bits (543), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 159/471 (33%), Positives = 239/471 (50%), Gaps = 27/471 (5%) Query: 27 VLAGCSVAPTYERPSVDTPAAFKEAAPTTQAGANGSQWKTAQPAEDIHRGQWWKIFGDDK 86 VL+ CS+AP Y RP AP S Q + H W F D + Sbjct: 14 VLSACSMAPKYTRPD----------APVAADYPAASAAADKQ--QRAHETGWRNFFPDQR 61 Query: 87 LNALEDTAQQANQDLKAAAARLGQARALTRDARSGYFPQVDTGVGATRQRTSPAS---QG 143 L AL A N+DL+ AA R+ +ARA + P ++ +R RT PAS G Sbjct: 62 LQALIGAALANNRDLRVAALRIEEARAQYNIQSADLLPNLNGTFTGSRART-PASISPTG 120 Query: 144 LPADANTQPFTLYRAQVNVSYEVDLFGRVASTVDAATADAQRSEALFHSVLLALQADVAQ 203 + + ++ L A S+E+D FGRV S DAA A +E + ++L A+VA+ Sbjct: 121 IDSVSSAYQVGLSLA----SFELDFFGRVHSLNDAALASYLATEEAQRAAHISLVAEVAK 176 Query: 204 QYFQVRELDAAAELYRGTVDLRQESLRLVQRRFDEGDISEVDVARARAELASAQSEALGI 263 Y R L + T+ R + L ++RF+ G S +D+ + A L SA+ + + Sbjct: 177 AYLAERAFAEQLALAQSTLKSRGTAYDLAKQRFEVGASSALDLRQNEALLQSARVAQVTL 236 Query: 264 ARQRATAEHALAILLGRTPAEFSLPPQPLN--RLAVTVPAGLPSTLLERRPDIAAAERAM 321 ARQRA A +AL +L+G+ F QPL+ + +PAGLPS LL +RPDI +AE+++ Sbjct: 237 ARQRAQALNALTLLVGQPLTGFP-EAQPLSAQNIVTDIPAGLPSDLLTQRPDIRSAEQSL 295 Query: 322 AAANARVGVAKSAFFPSLNLTGGLGYESAQLGDLFNWSSRTFLLGPLVGTALSMPIFDGG 381 AANA +G A++AFFP ++LT G+G S+ L +LF+ +R + P L +PIFD G Sbjct: 296 LAANANIGAARAAFFPRISLTAGIGTASSTLSNLFDSGTRAWTFAP----QLVLPIFDAG 351 Query: 382 RRQAGVDRARASYEEQVATYRGTVLNAFREVEDNLANLRILDEQNRAQDEAVAASTRAAH 441 R A + + +A Y ++ +AFREV D L +L+EQ AQ A Sbjct: 352 RNSANLTLSEVRKNIAIANYEKSIQSAFREVSDALVARDLLEEQIDAQRRVQEAQAERLK 411 Query: 442 LSHTQYREGAVSYFDVIDADRTVLQQQRASVTLDGERARSTVNLIRALGGG 492 L+ +++ G S DV+DA R + ++ V R + ++L R+LGGG Sbjct: 412 LADQRFQNGIASSLDVLDAQRELFSAEQDLVQARLLRLTNAIDLYRSLGGG 462 >gi|134095761|ref|YP_001100836.1| putative outer membrane transport protein involved in copper (silver) tolerance (cusC) [Herminiimonas arsenicoxydans] Length = 502 Score = 206 bits (524), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 155/431 (35%), Positives = 221/431 (51%), Gaps = 37/431 (8%) Query: 78 WWKIFGDDKLNALEDTAQQANQDLKAAAARLGQARALTRDARSGYFPQVDTGVGATRQRT 137 W F D +L L A + N+DL+AA R+ +ARA R+ FP + G+ R Sbjct: 66 WRDYFTDARLQDLIAQALENNRDLRAAVLRVEEARAAYGIQRAEQFPAIAAQAGSERAH- 124 Query: 138 SPASQGLPADANTQPFTLYRAQVNVS-----YEVDLFGRVASTVDAATADAQRSEALFHS 192 +PAD + +Q +VS +E+D +GRV S DAA + S+ + Sbjct: 125 ------VPADLSLTGKPAMSSQYHVSLGLASWEIDFWGRVRSLRDAALENYLASDEARRA 178 Query: 193 VLLALQADVAQQYFQVRELDAAAELYRGTVDLRQESLRLVQRRFDEGDISEVDVARARAE 252 V ++L A VA Y + ELD L R T+ R+ESLR+ RR + G S +++ + + Sbjct: 179 VTISLVAQVANSYLALCELDERIALARLTIASREESLRIFTRRVEVGSTSRLNLTQVQTL 238 Query: 253 LASAQSEALGIARQRATAEHALAILLGRT---PAEFS--------LPPQPLNRLAVTVPA 301 L+ AQ+ + + RA +AL +L+G T PA S LP QP Sbjct: 239 LSQAQALGAQLEQARALQANALILLVGVTLELPATSSRLDERQMLLPLQP---------- 288 Query: 302 GLPSTLLERRPDIAAAERAMAAANARVGVAKSAFFPSLNLTGGLGYESAQLGDLFNWSSR 361 GLPS LL RRPDI AAE + AA+A++G A++AFFP + LTG G SA+L LF SR Sbjct: 289 GLPSDLLIRRPDIVAAEHQLKAAHAQIGAARAAFFPRIALTGSFGTASAELDGLFAAGSR 348 Query: 362 TFLLGPLVGTALSMPIFDGGRRQAGVDRARASYEEQVATYRGTVLNAFREVEDNLANLRI 421 + P ++S+P+FD GRR + A A + VA Y T+ AFR+V D LA + Sbjct: 349 AWTFAP----SISLPLFDAGRRSNNLSLAEARRDLAVANYEKTIQAAFRDVADALAARQW 404 Query: 422 LDEQNRAQDEAVAASTRAAHLSHTQYREGAVSYFDVIDADRTVLQQQRASVTLDGERARS 481 L +Q A+ T A LS +Y GA +Y DV+DA R +L ++ V + S Sbjct: 405 LAQQLLIAQAALTTQTERARLSQLRYDNGAAAYLDVLDAQRDLLVAEQQLVQIRRALLSS 464 Query: 482 TVNLIRALGGG 492 V+L ALGGG Sbjct: 465 QVSLYAALGGG 475 >gi|134094170|ref|YP_001099245.1| putative outer membrane protein [Herminiimonas arsenicoxydans] Length = 469 Score = 192 bits (488), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 153/481 (31%), Positives = 235/481 (48%), Gaps = 30/481 (6%) Query: 22 LAALLVLAGCSVAPTYERPSVDTPAAFKEAAPTTQAGANGSQWKTAQPAEDIHRGQWWKI 81 +A L ++GC+ +P+V+ PA + E AP AG ++ R WW+ Sbjct: 16 VAVLFAVSGCAHNIDASKPNVEIPATWAEVAP---AGI------------ELQR-DWWRG 59 Query: 82 FGDDKLNALEDTAQQANQDLKAAAARLGQARALTRDARSGYFP--QVDTGVGATRQRTSP 139 FG ++L+AL D + + DL AA R+ QA A + FP V G + + P Sbjct: 60 FGSNELSALIDQSLAGSPDLIIAAERVTQAEITASSAGASLFPLLTVSAGTDTGQVKPGP 119 Query: 140 ASQGLPADANTQPFTLYRAQVNVSYEVDLFGRVASTVDAATADAQRSEALFHSVLLALQA 199 G +T ++V+YEVD++GRVA+T +A A S +V L L Sbjct: 120 TGSGWARSESTG------VALSVNYEVDVWGRVAATTRSANASLNASRYDLETVRLTLTT 173 Query: 200 DVAQQYFQVRELDAAAELYRGTVDLRQESLRLVQRRFDEGDISEVDVARARAELASAQSE 259 VA YFQ L ++ + + + ++ +V+ R+ G S +DV+R R+ + + ++ Sbjct: 174 GVANAYFQTLALRMQLQVAQENLAIAEKLFSIVEARYRFGAASALDVSRQRSTVLAQRAT 233 Query: 260 ALGIARQRATAEHALAILLGRTPAEFSLPPQPLNRLAV-TVPAGLPSTLLERRPDIAAAE 318 L + Q ALAILLGR P + L+ LA+ V GLPSTL+ RRPD+A+ E Sbjct: 234 ILPLQVQERQTVSALAILLGRQPQALQVAALSLDTLAIPEVSPGLPSTLITRRPDVASVE 293 Query: 319 RAMAAANARVGVAKSAFFPSLNLTGGLGYESAQLGDLFNWSSRTFLLGPLVGTALSMPIF 378 + A +A V A++A P+++LTG G SA L L N + + +V T +F Sbjct: 294 AQLLAGSANVAAARAALLPTISLTGSAGNASAALLTLGNPAYSIGIAASIVQT-----LF 348 Query: 379 DGGRRQAGVDRARASYEEQVATYRGTVLNAFREVEDNLANLRILDEQNRAQDEAVAASTR 438 DG + V+ ++ + +YR TV A +EV+D L N EQ +AQ + R Sbjct: 349 DGNSLRLRVETNESTRRQLAESYRRTVYTALKEVDDALGNATRNREQEQAQIAIKKEAER 408 Query: 439 AAHLSHTQYREGAVSYFDVIDADRTVLQQQRASVTLDGERARSTVNLIRALGGGWGGPDT 498 A LS +YREGA ++DA RT+ L R T ++ +ALGGGW P T Sbjct: 409 ALALSELRYREGADDLNSLLDAQRTLFAADDKLTQLRLLRLTGTTDVFKALGGGWSKPQT 468 Query: 499 Q 499 + Sbjct: 469 E 469 >gi|134095560|ref|YP_001100635.1| outer membrane transport protein involved toxic tolerance [Herminiimonas arsenicoxydans] Length = 476 Score = 190 bits (482), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 155/480 (32%), Positives = 240/480 (50%), Gaps = 27/480 (5%) Query: 22 LAALLVLAGCSV-APTYERPSVDTPAAFKEAAPTTQAGANGSQWKTA---QPAEDIHRGQ 77 LA L ++GC++ P + PAA+ T AG N + +A Q A DI Sbjct: 11 LAITLAVSGCAMLEPQLPKADAAIPAAWPLPPNTAAAGQNVTADTSATKEQAAADIG--- 67 Query: 78 WWKIFGDDKLNALEDTAQQANQDLKAAAARLGQARALTRDARSGYFPQVDTGVGATRQRT 137 W F D KL L A N+DL+ A + +ARA + + FP +D V R Sbjct: 68 WRDFFVDPKLEELIARALHNNRDLRVAVLNVERARAQYQIQNAERFPALDGSVARNRSGG 127 Query: 138 SPASQGLPADANTQPFTLYRAQVNVSYEVDLFGRVASTVDAATADAQRSEALFHSVLLAL 197 + + P Y A ++ S+E+DLFGR+ + AA E S L+L Sbjct: 128 NVVN----------PGDYYSAALSASFELDLFGRIHNLSQAALEQYFAQEEGQRSAQLSL 177 Query: 198 QADVAQQYFQVRELDAAAELYRGTVDLRQESLRLVQRRFDEGDISEVDVARARAELASAQ 257 A++A Y + + + T D +Q + LV +R G +S +D+++A+ + +A+ Sbjct: 178 IAEIANTYLTFAADLESQRIAQATFDNQQIAYDLVVKRHRAGAVSGLDLSQAQTTIETAR 237 Query: 258 SEALGIARQRATAEHALAILLGRTPAEFSLPPQPLNRLAVT----VPAGLPSTLLERRPD 313 ++ A AT +AL +L+G P E SL PQ + L V+ +PA LPS +L RRPD Sbjct: 238 ADVARYAGLVATDRNALTLLVG-APVEDSLLPQGFD-LKVSGIAPLPAQLPSQVLLRRPD 295 Query: 314 IAAAERAMAAANARVGVAKSAFFPSLNLTGGLGYESAQLGDLFNWSSRTFLLGPLVGTAL 373 + E + ANA +G A++AFFPS++LTG +G S QL LF+ ++ + P + Sbjct: 296 VRQTEHVLRGANANIGAARAAFFPSISLTGSVGSASNQLSGLFDSGTKFWSFVPQI---- 351 Query: 374 SMPIFDGGRRQAGVDRARASYEEQVATYRGTVLNAFREVEDNLANLRILDEQNRAQDEAV 433 S+PIF GG +A + A A + +A Y + + FREV D LA L ++ +AQ + Sbjct: 352 SLPIFHGGALRANLGVATADRDIALARYEKAIQSGFREVADALALTSTLAQRRQAQQALL 411 Query: 434 AASTRAAHLSHTQYREGAVSYFDVIDADRTVLQQQRASVTLDGERARSTVNLIRALGGGW 493 A++RA LS +Y+ G S+ ++DA RT Q++ V + V L + LGGGW Sbjct: 412 DAASRAYDLSKARYQYGRDSFLILLDAQRTFYTAQQSLVAAQLAEQGNRVTLYKVLGGGW 471 >gi|134095533|ref|YP_001100608.1| putative RND efflux system, outer membrane lipoprotein, NodT [Herminiimonas arsenicoxydans] Length = 499 Score = 172 bits (437), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 153/498 (30%), Positives = 236/498 (47%), Gaps = 30/498 (6%) Query: 8 MTRLLRPVRIGSALLAALLV--LAGCSVAPTYERPSVDTPAAFKEAAP-TTQAGANGSQW 64 M+ + P R L+ L+ ++ C+V P Y R T A+ + P T A NG+ Sbjct: 1 MSATINPCRY---LIVVTLIQLISACTVGPDYIRQPPPTETAYTKKDPIVTTADNNGN-- 55 Query: 65 KTAQPAEDIH-----RGQWWKIFGDDKLNALEDTAQQANQDLKAAAARLGQARALTRDAR 119 A+ H WW +F L D + + N L+AA A L +++ + Sbjct: 56 -----AQRFHTDAAISADWWNLFHSADLGEAVDRSLRNNASLQAAQASLKESQHNLQAGY 110 Query: 120 SGYFPQVDTGVGATRQRTSPASQGLPADANTQPFTLYRAQVNVSYEVDLFGRVASTVDA- 178 +FPQ+ ATRQ S G + F L+ +SY +D+FG V+A Sbjct: 111 GVFFPQIGGSFSATRQLPSAFRFGSASPVGI--FNLFTLGAAISYTLDIFGGERRMVEAL 168 Query: 179 -ATADAQRSEALFHSVLLALQADVAQQYFQVRELDAAAELYRGTVDLRQESLRLVQRRFD 237 A AD Q+ AL + L L +V A E + + +QE L + + + Sbjct: 169 GAQADYQKYVAL--ATYLTLSGNVVNTAIARAAYHAQYEATQQLILRQQEQLAVAENQAA 226 Query: 238 EGDISEVDVARARAELASAQSEALGIARQRATAEHALAILLGRTPAEFSLPPQPLNRLAV 297 G V R+ LAS+Q+ +A++R A+H LA L G T + L +L + Sbjct: 227 HGIAPYATVLSLRSLLASSQAALAVVAQKRDQADHLLANLQGTTASGTYTSSFDLAQLEL 286 Query: 298 --TVPAGLPSTLLERRPDIAAAERAMAAANARVGVAKSAFFPSLNLTGGLGYESAQLGDL 355 +P LPS L+ +RPD+ AAE + A+A VGVA +A FPS +L + +LG+L Sbjct: 287 PQDLPLTLPSELVRQRPDVLAAEAQLHVASAGVGVATAALFPSFSLGANYALGNTKLGNL 346 Query: 356 FNWSSRTFLLGPLVGTALSMPIFDGGRRQAGVDRARASYEEQVATYRGTVLNAFREVEDN 415 + SS+ + VG+ + +PIF GG A+ +Y++ +A YR TVL+AF++V D Sbjct: 347 SDSSSKFWS----VGSGVDVPIFQGGTAWHKRRAAQDAYQQALANYRQTVLSAFQQVADV 402 Query: 416 LANLRILDEQNRAQDEAVAASTRAAHLSHTQYREGAVSYFDVIDADRTVLQQQRASVTLD 475 L + + +AQ E++ A+ + L YR G VSY DV+ A+ Q + A + Sbjct: 403 LTAIEHDAQAVKAQAESLGAAEQTLKLIEVNYRAGLVSYLDVLAANTQFYQSKIAYLQAL 462 Query: 476 GERARSTVNLIRALGGGW 493 G R + T L ALGGGW Sbjct: 463 GLRYQDTTALFVALGGGW 480 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.317 0.129 0.363 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 805,228 Number of extensions: 29690 Number of successful extensions: 153 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 126 Number of HSP's successfully gapped: 8 Length of query: 504 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 418 Effective length of database: 716,977 Effective search space: 299696386 Effective search space used: 299696386 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)