BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0286.p
         (167 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094701|ref|YP_001099776.1| hypothetical protein HEAR1478 [...   150   4e-38

>gi|134094701|ref|YP_001099776.1| hypothetical protein HEAR1478
           [Herminiimonas arsenicoxydans]
          Length = 170

 Score =  150 bits (379), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 78/168 (46%), Positives = 108/168 (64%), Gaps = 2/168 (1%)

Query: 1   MSITLYQVSIPMLIHGLNTLSSLLEKAEQHAQAQQIDHQQLLSARLYEDMLPLIGQVQRA 60
           M+I+LY  S+P+L   LN++S LL+K E+HA A+ ID    L ARLY DM PLI QVQ A
Sbjct: 1   MTISLYAASVPVLKQMLNSVSDLLKKTEEHAAAKNIDPNAYLQARLYPDMFPLIRQVQIA 60

Query: 61  SDTAKASASRLSSVAAPAFADEEA-SFDDLQARINKTIVFLEAIPADAINGQEERAVTLK 119
            D A+  ++RL+ +  P   D  A +F DL+A + +TI FL++I    I+GQE R + L+
Sbjct: 61  GDFARGVSARLAGLDVPKVDDSLATTFADLRAMLAETITFLDSIKPAQIDGQEARDIVLR 120

Query: 120 L-RGEECTMTAQQYLTDFGLPNFLFHVTTAYAILRNQGVKLGKMDFLN 166
               +E     Q YL  FGLP F FHVTT YAILR+ G+++GK D++ 
Sbjct: 121 PGTPKERKFNGQDYLLHFGLPQFFFHVTTTYAILRHNGIEIGKRDYMG 168


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.131    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 239,551
Number of extensions: 7469
Number of successful extensions: 33
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 1
Length of query: 167
Length of database: 1,000,347
Length adjustment: 75
Effective length of query: 92
Effective length of database: 753,222
Effective search space: 69296424
Effective search space used: 69296424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)