BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0283.p
         (555 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093716|ref|YP_001098791.1| hypothetical protein HEAR0446 [...    72   6e-14
gi|134093706|ref|YP_001098781.1| hypothetical protein HEAR0435 [...    70   3e-13

>gi|134093716|ref|YP_001098791.1| hypothetical protein HEAR0446
           [Herminiimonas arsenicoxydans]
          Length = 399

 Score = 72.4 bits (176), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 79/150 (52%), Gaps = 14/150 (9%)

Query: 385 ARTWRGPDGQLRQ-----LLDD----EEASNLRIRAGTLNDEERAIINNHIVITIKMLES 435
           AR  +  DGQ+R      LL D      + ++  + G L DEE  ++  H V   K+L  
Sbjct: 171 ARKMKLDDGQIRDAGLAGLLHDVGKMMVSQSILDKPGQLTDEEFVVVKEHPVEGHKILSV 230

Query: 436 LPWPKQLARVTEFAGGHHERMDGKGYPKGLTREQMSVQARIMAVADIFEAVTAVDRPYKR 495
            P   + A   +    HHER DG GYP  L  E +S+ AR+ AV D+++A+T+ +R YK 
Sbjct: 231 SPDVSEAA--LDVCLHHHERFDGTGYPHRLAGENISLFARMGAVCDVYDAITS-NRAYKA 287

Query: 496 GNTLNEAVEILAGFKARDHIDPDLFDLFVR 525
           G   +E++  +A +K   H DP +F  FV+
Sbjct: 288 GWEPSESLRRMAEWKG--HFDPAVFQAFVK 315


>gi|134093706|ref|YP_001098781.1| hypothetical protein HEAR0435
           [Herminiimonas arsenicoxydans]
          Length = 457

 Score = 70.1 bits (170), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 64/108 (59%), Gaps = 5/108 (4%)

Query: 414 LNDEERAIINNHIVITIKMLESLPWPKQLARVTEFAGGHHERMDGKGYPKGLTREQMSVQ 473
           L+ +E   +  H   T  +L  +    +LAR+   AG HHER+DG GYP+GL  + +S++
Sbjct: 344 LDRDEWDAVKLHATYTENILSRIGAFAELARI---AGAHHERLDGGGYPRGLKADAISIE 400

Query: 474 ARIMAVADIFEAVTAVDRPYKRGNTLNEAVEILAGFKARDHIDPDLFD 521
            RI+  ADIF+A+TA +RPY+    +   +E++A  +    +DP  F+
Sbjct: 401 TRIITTADIFDAITA-ERPYRGAIPIPRTLEMMATTQG-TALDPLCFE 446


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.135    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,004,065
Number of extensions: 40470
Number of successful extensions: 135
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 2
Length of query: 555
Length of database: 1,000,347
Length adjustment: 86
Effective length of query: 469
Effective length of database: 716,977
Effective search space: 336262213
Effective search space used: 336262213
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)