BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0278.p
         (582 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095057|ref|YP_001100132.1| putative signal peptide [Hermin...    61   2e-10

>gi|134095057|ref|YP_001100132.1| putative signal peptide
           [Herminiimonas arsenicoxydans]
          Length = 560

 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 96/222 (43%), Gaps = 4/222 (1%)

Query: 40  AIAQPVAAPVAAVMQQA--TAPLPEDERFDIRRFAIEGNTLLSQTRLDEVVAPFTGTGRV 97
           A A+P+  P   + Q A  TA + + ++  +R   + G  + ++  L +V          
Sbjct: 43  APAKPI--PEIRIEQDAAPTAAVSDHQKILVRSLQVTGAHVYAEAALLDVTGFSASRELT 100

Query: 98  YGDIQQALEAVENAYRSAGYTAVQVSVPEQELSQGVVRLQVLETVVGKVVVSDNRYFSQE 157
             +++     +   Y   GY   Q  +P Q++  GVV + VLE   GKV V ++   S +
Sbjct: 101 LSELRGMASKIARYYHVRGYLLAQAYLPAQDIKDGVVTIAVLEGHYGKVTVRNSTNLSDD 160

Query: 158 NIRASIPGLREGSSPNLRSISEAVQLANDNPAKQVNVTLTASETTNQIDAAINVKDDKPL 217
                + GL    + ++  +  ++ L +D P   V  TL    +    D  ++V   + +
Sbjct: 161 LANGLLSGLNSSDAVSIAPLETSLLLLSDLPGVNVRSTLVPGASVGASDLIVDVTPGQRV 220

Query: 218 RVMLNLDNSGSADTGHWRTGVAVQHSNLFNRDHVATVAYTTS 259
              +++DN G+  TG  R G  V  +N      VAT+   TS
Sbjct: 221 TGAVDVDNGGNRYTGAHRVGATVNINNPTGLGDVATLRALTS 262


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.131    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,006,754
Number of extensions: 41003
Number of successful extensions: 135
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 1,000,347
Length adjustment: 87
Effective length of query: 495
Effective length of database: 713,682
Effective search space: 353272590
Effective search space used: 353272590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)