BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0277.p
         (757 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093475|ref|YP_001098550.1| putative two-component system s...    91   2e-19

>gi|134093475|ref|YP_001098550.1| putative two-component system
           sensor histidine kinase [Herminiimonas arsenicoxydans]
          Length = 799

 Score = 90.9 bits (224), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 127/488 (26%), Positives = 200/488 (40%), Gaps = 141/488 (28%)

Query: 41  RLDLFFYDLRMRVTKPYLDPRIVIIDIDEKSIAELGRWP-WSRDVVAQLVKQMTQTYQAQ 99
           RLD   YDL +       +  I+I+ ID+ S++ELGRWP WSR   A+L++++ +    +
Sbjct: 40  RLDQARYDLFLSTKSAAANEDIIIVAIDDYSLSELGRWPSWSRATHAELIQRLNRAM-PR 98

Query: 100 SVGFDVVFAEPD------NTSGYGRLEDLARGPLKDVPQLAQQLRLLKPQMDYDARLAAA 153
           ++GFDV+ +E +       +SG                               D +LAAA
Sbjct: 99  AIGFDVIMSEAEPHQPGATSSG-------------------------------DQQLAAA 127

Query: 154 LQGQ-----PVVMGYAFSSEPGAVTKGQLPPPAFSLADLGGRDLDVIGWRAYGANLPQLQ 208
           L+       PV M  A                        GR L V          P+L 
Sbjct: 128 LRQNGRTVLPVTMTNA------------------------GRGLTV------SLPTPELA 157

Query: 209 AAARAGGFFNQVPGDDGLVRAVPLIARYGN------QFYESLALATARVAVDGKRIKPVF 262
            AA A G  N     DG+VR+V L  R G       QF  +L LAT   A   +      
Sbjct: 158 RAAHALGHINLAYDSDGVVRSVFL--REGQHDVWWPQFSAAL-LATGNPAQAAR------ 208

Query: 263 LTTADGLMESQKYDYGALAGIAVQARPQPLFIPVERGLTTLVTYRGPGGPNGGAFRYVPA 322
                  M +Q  +    +GI    R   + IP          + G    + G  R VP 
Sbjct: 209 -------MPAQDKEAPTFSGIDNWQRADQMHIP----------FTG----STGHVRSVPY 247

Query: 323 VDVIRGTYPHEQLDGRIMLVGTTVPGLNDLRATPVN---AIYPGVEIHANLIASILDDDF 379
           V V+RG  P E    + +LVG T  G++D   TPV+      PGVEIHA +++S+L+ + 
Sbjct: 248 VSVLRGEVPDEFFTDKYVLVGATALGMSDSYPTPVSGSTGAMPGVEIHAQILSSLLNGE- 306

Query: 380 KSRPDFAQGYDALQVALVGMLLGLL-LPMLGPLASMLLAL-----SSAAALGGLNLWLYN 433
             R   A  ++A+   +  + + +L   +L P  ++  AL     + AA+  GL      
Sbjct: 307 --RIRLANAWEAMLFTVTPVFMAMLGYLLLSPRRALFAALMWLLTTIAASYIGLCY---- 360

Query: 434 GAGMVLPLATSILLVLLLFISNLAWGYLFEYRNRKAIVNLFGEYV-----APELVAEMAA 488
             G+ LP + +++ V + +        L+ +R  +  +   G+        P L+ E   
Sbjct: 361 -MGIWLPPSIALIAVTISYP-------LWSWRRLEVAITYLGQEFDRLNREPHLLPEQ-- 410

Query: 489 NPASYNME 496
            PA+++ME
Sbjct: 411 QPAAHSME 418


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.138    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,343,905
Number of extensions: 56426
Number of successful extensions: 152
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 1
Length of query: 757
Length of database: 1,000,347
Length adjustment: 89
Effective length of query: 668
Effective length of database: 707,092
Effective search space: 472337456
Effective search space used: 472337456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)