BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0276.p
         (280 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096464|ref|YP_001101539.1| putative oxidoreductase [Hermin...   347   3e-97

>gi|134096464|ref|YP_001101539.1| putative oxidoreductase
           [Herminiimonas arsenicoxydans]
          Length = 277

 Score =  347 bits (891), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 169/274 (61%), Positives = 206/274 (75%)

Query: 7   ITLRNGAQVPTLGQGTWNMGESGAAAATEVRALQAGIDLGMTLIDTAEMYADGNAERIVG 66
           I L +G  VP LGQGTW MG+  +  A E+  L+ G+D GMTLIDTAEMY DG +E++VG
Sbjct: 4   IKLPSGEAVPVLGQGTWYMGDHASRRAEEIATLRLGLDFGMTLIDTAEMYGDGASEKLVG 63

Query: 67  QAIAGRRQQVYLVSKVLPHNASQRGTIAACEASLKRLGTDHIELYLLHWRGPHPLAATVE 126
           +AIAGRR +V+LVSKVLP NA++ GTIAACE SLKRLGTD I+LYLLHWRG  P A T+ 
Sbjct: 64  EAIAGRRDEVFLVSKVLPSNATRHGTIAACERSLKRLGTDRIDLYLLHWRGRTPFAETIA 123

Query: 127 GMEKLVAQGKIGGWGVSNLDSDDIDELLQEPQGSHYLCNQVLYNLSRRGIEYDLLPQALE 186
             E L   GKI  WGVSN+D DD+ E+ +   G     NQVLYNL+RRGIEYDLLPQA +
Sbjct: 124 AFEALQDAGKIRHWGVSNMDVDDMREIARASGGEAVAVNQVLYNLTRRGIEYDLLPQAQQ 183

Query: 187 QGVAIMAYSPIEQGRILKNATLGTVAQRHGVTPAQVALAWVLRRPGVIAIPKAADTAHVQ 246
           +G+ IMAYSPIEQGR+ ++  +  +A RHG +PAQ+ALAWVLR+PGVIAIPKA+  AHVQ
Sbjct: 184 RGLPIMAYSPIEQGRLTESPEVQDIADRHGASPAQIALAWVLRQPGVIAIPKASTPAHVQ 243

Query: 247 ANRACLDLQLTAADLKELDAAFPPPRRKQPLAML 280
            NRA LD++LTA DL ELD  FPPP   + L M+
Sbjct: 244 QNRAALDIKLTAQDLAELDDTFPPPDGPESLEMI 277


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.134    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 544,184
Number of extensions: 22294
Number of successful extensions: 73
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 199
Effective length of database: 733,452
Effective search space: 145956948
Effective search space used: 145956948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)