BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0275.p
         (418 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094326|ref|YP_001099401.1| putative heat-shock protein Hsp...   568   e-163
gi|134095416|ref|YP_001100491.1| chaperone protein HscA [Hermini...    58   1e-09

>gi|134094326|ref|YP_001099401.1| putative heat-shock protein Hsp 70
           [Herminiimonas arsenicoxydans]
          Length = 416

 Score =  568 bits (1464), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 280/417 (67%), Positives = 331/417 (79%), Gaps = 2/417 (0%)

Query: 1   MANACGVDFGTSNSTVGWQRPQAGDSLLLPLEDGRATLPSVVFFNADENSFSYGRAGLGE 60
           MANACGVDFGTSNSTVGW RP  G S LL LEDG+ TLPSV+FFNADE    YGRA L  
Sbjct: 1   MANACGVDFGTSNSTVGWSRP--GVSPLLQLEDGKVTLPSVIFFNADEEQVYYGRAALAN 58

Query: 61  YLAGYEGRLMRSLKSLLGSGAIDGQTEVGGRALPYRGLLSQFIGELKQRAERAAGTAFSQ 120
           YL GYEGRLMRSLKSLLG+  ID QTEV G+ALP+R LL+QFI ELK+RAE AAG  FS 
Sbjct: 59  YLQGYEGRLMRSLKSLLGTSLIDDQTEVMGKALPFRTLLTQFIAELKRRAETAAGREFSS 118

Query: 121 VVLGRPVHFVDDDAAADQLAQDTLEQIARDVGFKDIAFQFEPIAAAFDYESRIDREELVL 180
           VVLGRPV FVD +  AD LA+DTL +IA+ VGF+DI FQ+EPIAAAFDYES+I+REELVL
Sbjct: 119 VVLGRPVFFVDGNEEADILAEDTLYEIAQSVGFRDIDFQYEPIAAAFDYESQIEREELVL 178

Query: 181 IVDIGGGTSDFSLVRLSPQRASRSERRDDILANGGVHIGGTDFDKYFSLACVMPLLGLGG 240
           I DIGGGTSDFSLVRL+P+RA +++RRDDILA GGVHIGGTDFDKY SL  +MP LGLG 
Sbjct: 179 IADIGGGTSDFSLVRLAPERAKKADRRDDILATGGVHIGGTDFDKYLSLTSIMPQLGLGS 238

Query: 241 RLLGNAEIPSSYYFNLATWHTINQLYTRKAWQQLQDVAREVADRERFARLLDVVEQRCGH 300
           RL  N E+PSSYY+NLATWHTIN  YT+K W Q++D+ R+  ++++   LL ++E R GH
Sbjct: 239 RLNNNNEVPSSYYYNLATWHTINLAYTQKTWLQIKDIYRDAMEKDKLDSLLHLIEHRSGH 298

Query: 301 WLALQVEAGKIALSSADQTLLDLERLRKPEQLQLQRSDFDAAVDHLVQSVEQTVLALLQQ 360
           WLAL+ E GKIALS+  +T L L+RL     L L+R +FD A+  +V +V  TV  LL+ 
Sbjct: 299 WLALKAEEGKIALSAELETQLVLDRLVPAHTLTLRRDEFDDAIHKMVAAVGSTVANLLRD 358

Query: 361 AGLRADDIDSVFFTGGSSGVRLLRERIGALAPKARHVEGDLFGSIGSGLAIDAVRKF 417
           AG+ AD +D+V FTGGSSGV LLRE+IG+L P AR VEGDLFGSIG+GLA+DAVRKF
Sbjct: 359 AGITADQVDTVVFTGGSSGVHLLREKIGSLLPNARRVEGDLFGSIGAGLALDAVRKF 415


>gi|134095416|ref|YP_001100491.1| chaperone protein HscA
           [Herminiimonas arsenicoxydans]
          Length = 620

 Score = 57.8 bits (138), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 104/244 (42%), Gaps = 46/244 (18%)

Query: 4   ACGVDFGTSNSTVGWQRPQAGDSLLLPLEDGRATLPSVVFFNADENSFSYGRAGLGEYLA 63
           A G+D GT+NS V   R    +  +L  E+GR+ LPSVV +         G A +G    
Sbjct: 21  AVGIDLGTTNSLVATVRNSIPE--ILTDEEGRSLLPSVVHY------LKNGSAHIGYKAQ 72

Query: 64  GYEG----RLMRSLKSLLGSGAID---------------GQTE---VGGRALPYRGLLSQ 101
             +       + S+K  +G G  D               G  +   V G   P   + ++
Sbjct: 73  AAQNTDPKNTIVSVKRFMGRGLKDIAYAENLPYDFLDTPGMVQLKTVAGVKSPVE-VSAE 131

Query: 102 FIGELKQRAERAAGTAFSQVVLGRPVHFVDDDAAADQLAQDTLEQIARDVGFKDIAFQFE 161
            +  L+Q+AE A G      V+  P +F   D A  Q  +D     A+  G   +    E
Sbjct: 132 ILATLRQQAEDALGDDLVGAVITVPAYF---DDAQRQATKDA----AKLAGLNVLRLLNE 184

Query: 162 PIAAAFDYESRIDREELVLIVDIGGGTSDFSLVRLSPQRASRSERRDDILANGG-VHIGG 220
           P AAA  Y      E +  + D+GGGT D S+++L       ++   ++L+ GG   +GG
Sbjct: 185 PTAAAIAYGLDNGSEGVFAVYDLGGGTFDVSILKL-------TKGVFEVLSTGGDSALGG 237

Query: 221 TDFD 224
            DFD
Sbjct: 238 DDFD 241


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.138    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 767,374
Number of extensions: 31312
Number of successful extensions: 96
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 2
Length of query: 418
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 334
Effective length of database: 723,567
Effective search space: 241671378
Effective search space used: 241671378
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)