BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0270.p
         (810 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093348|ref|YP_001098423.1| putative TonB-dependent recepto...    56   6e-09

>gi|134093348|ref|YP_001098423.1| putative TonB-dependent receptor
           protein [Herminiimonas arsenicoxydans]
          Length = 763

 Score = 56.2 bits (134), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 132/312 (42%), Gaps = 38/312 (12%)

Query: 470 QSIFLQDSISMMNDKLNVQVGGRYSSIDRDFTNYPSTGSTSGTNSYSSAAFYKVKKNYAD 529
           QS++ QD+  +  +     +GGR            S GS S  NS ++ AF    +NY  
Sbjct: 463 QSLYAQDTWRIAKN-WKTTLGGRLEQWQ------ASNGSLS--NSNTTVAFNDRNENY-- 511

Query: 530 FLPSVGVRFQLDEKQSVFFNAAKNFKAPG-NFSYFGLLSGGTIVNGQLVGATQRDVPVDK 588
           F P   + +Q   + ++  +  +  + P  +  Y G L   T +       ++ D  +  
Sbjct: 512 FSPKAAIAYQATPQWALKASLGRAIRFPTVSELYQGSLDPTTNI------LSKNDPNLKP 565

Query: 589 ETSWNYDLGYRYNTDKWMASGSLFYIDYHNRIASAYNPDTNNKTDYNVGDSTSHGMEL-- 646
           E SW  +L    +    +   ++F+ D  + + S  N  TN     NV    + G+E+  
Sbjct: 566 EKSWTSELTAERDLGNGLLRATIFHEDTKDALYSQLNVATNVTNIQNVDHMRTTGLEVAY 625

Query: 647 ETGYAFTRNLSMYGSLSYIKSKMKQDLRNGASQFLPTSGKEFPDTPNWLSGLSLQYQQDG 706
           +      R L + GS+++  SK  ++  N AS      GK  P  P W +     Y+ D 
Sbjct: 626 QANDIAIRGLDLSGSVTFADSKTVRNDNNPAS-----VGKWQPRVPKWRASALASYRPDD 680

Query: 707 -W-YVFGQGKYTGRRYTTLVNDDALG-GYTVFNAGAGMTFASSTWL-----KKPTVRLNV 758
            W Y FG  +Y+GR+Y  L N D  G  YT    G    F +   +     K+ T  L +
Sbjct: 681 RWTYTFG-ARYSGRQYGQLDNSDVNGFAYT----GVSSFFVTDVRVRYRIAKQWTASLGI 735

Query: 759 YNLFDKQYLNLN 770
            NL +K+Y N +
Sbjct: 736 DNLNNKKYWNFH 747


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.133    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,457,187
Number of extensions: 58770
Number of successful extensions: 110
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 1
Length of query: 810
Length of database: 1,000,347
Length adjustment: 89
Effective length of query: 721
Effective length of database: 707,092
Effective search space: 509813332
Effective search space used: 509813332
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 133 (55.8 bits)