BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0266.p
         (326 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096021|ref|YP_001101096.1| threonine deaminase [Herminiimo...   167   4e-43

>gi|134096021|ref|YP_001101096.1| threonine deaminase [Herminiimonas
           arsenicoxydans]
          Length = 507

 Score =  167 bits (424), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 114/325 (35%), Positives = 179/325 (55%), Gaps = 12/325 (3%)

Query: 14  TDVL--LAAQRIKPWAHQTPVLRSRTADAEVGAQLFFKCENFQRMGAFKFRGAMNALSQF 71
           TD L  +   R+   A ++P+  + T     G Q++FK E+ Q + +FK RGA N ++  
Sbjct: 3   TDYLKKILTARVYDVAVESPLELAPTLSQRFGNQIYFKREDIQSVFSFKLRGAYNKMAHL 62

Query: 72  DAEQRRHGVITFSSGNHAQGTALAAQLLGIPAVIVMPEDAPAAKVAATRGYGAEVVTYDR 131
              Q + GVI  S+GNHAQG AL+A  LG  AVIVMP   P+ K+ A +  G EVV +  
Sbjct: 63  PPAQMKRGVICASAGNHAQGVALSAARLGCRAVIVMPTTTPSVKIEAVKARGGEVVLFGD 122

Query: 132 YTEDREAIGARLAAERKMTLIPPYDHPHVIAGQGTATLELLQQ-TGPLDALFVCLGGGGL 190
              D       L  + K+T + P+D P VIAGQGT  +E+L+Q +GP+ A+FV +GGGGL
Sbjct: 123 SYSDAYQHALTLEKKLKLTFVHPFDDPDVIAGQGTIGMEILRQHSGPIHAIFVPIGGGGL 182

Query: 191 LSGAALAARALAPECKIYGVEPEAGNDGQQSLRAGHIVHIDTPKTIADGAQTQHLGKYTF 250
           ++G     +A+ P+ KI GV+    +   +SL++   V +      ADG   + +G+ TF
Sbjct: 183 IAGIGAYVKAVRPDIKIIGVQTVDSDAMARSLQSNRRVTMTDVGLFADGTAVKLVGEETF 242

Query: 251 EVIRQLVDDIHTVSDAELVSGLRFFAERMKMVVEPTGCLGFAAARKI-------KEQLQG 303
            + +  VDDI  VS  E+ S ++   +  + ++EP+G L  A A+         K+ ++ 
Sbjct: 243 RLAKLYVDDIILVSTDEVCSAIKDVFQDTRSILEPSGALSVAGAKAYIERAHADKKPIKN 302

Query: 304 KRVGVIISGGNIDLGKL--AAYLAD 326
           + +  I SG N++  +L   A +AD
Sbjct: 303 ETLITIASGANMNFDRLRFVAEMAD 327


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 560,340
Number of extensions: 20582
Number of successful extensions: 61
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 244
Effective length of database: 730,157
Effective search space: 178158308
Effective search space used: 178158308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)