BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0263.p (367 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095859|ref|YP_001100934.1| hypothetical protein HEAR2691 [... 142 3e-35 gi|134094940|ref|YP_001100015.1| GGDEF domain-containing protein... 134 1e-32 gi|134094022|ref|YP_001099097.1| hypothetical protein HEAR0777 [... 130 1e-31 gi|134093674|ref|YP_001098749.1| hypothetical protein HEAR0398 [... 116 2e-27 gi|134095595|ref|YP_001100670.1| hypothetical protein HEAR2418 [... 113 2e-26 >gi|134095859|ref|YP_001100934.1| hypothetical protein HEAR2691 [Herminiimonas arsenicoxydans] Length = 280 Score = 142 bits (357), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 70/163 (42%), Positives = 100/163 (61%), Gaps = 7/163 (4%) Query: 205 QKLEQQTMTDALTGIGNRRSFDSRLREEWTRHLRNARPLTMLMVDVDYFKQYNDTYGHPA 264 ++LE + D LTG+ NRR FDS + EW N +PL+++M+D+DYFKQYND YGH Sbjct: 108 KELETLSFKDGLTGVANRRMFDSIMAAEWANAKLNHQPLSVIMLDIDYFKQYNDHYGHIQ 167 Query: 265 GDALLVQLARVLRSPLRAS-DFLARYGGDEFSLILPDTDEIGAHQVSERIKQSVARVKWP 323 GD L ++A +L S R S DF AR+GG+EF L+LP+TDE+ A ++ER + + + K P Sbjct: 168 GDDCLKRVANILSSATRRSRDFFARFGGEEFILVLPETDELNAINIAERCRTLICKEKIP 227 Query: 324 HTD------IEISLGAATVTPSEMCDFSALLHAADQAMYQRKH 360 H I +SLG TV P++ D + D+ +YQ K Sbjct: 228 HEKSEVIPMITVSLGVGTVIPTDKDDPIRFIEEVDKRLYQAKQ 270 >gi|134094940|ref|YP_001100015.1| GGDEF domain-containing protein [Herminiimonas arsenicoxydans] Length = 519 Score = 134 bits (336), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 69/171 (40%), Positives = 108/171 (63%), Gaps = 7/171 (4%) Query: 196 AQIDSHRAMQKLEQQTMTDALTGIGNRRSFDSRLREEWTRHLRNARPLTMLMVDVDYFKQ 255 A+ D R+ +L + D+LTG+ NRR FD+ L +E+ R +RN L ++M+DVD+FK+ Sbjct: 332 ARDDLERSNGELAALALLDSLTGLANRRRFDAALDDEFARAMRNQTSLALIMLDVDHFKK 391 Query: 256 YNDTYGHPAGDALLVQLARVLRSPL-RASDFLARYGGDEFSLILPDTDEIGAHQVSERIK 314 YND YGHP GD L +++++L++ R D +ARYGG+EF ++LP TD GA V+ER++ Sbjct: 392 YNDRYGHPQGDECLKEISKILKTATARTGDLVARYGGEEFVILLPGTDRAGAAAVAERVR 451 Query: 315 QSVARVKWPHTD-----IEISLGAATVTPSEMCDF-SALLHAADQAMYQRK 359 ++ + H + + SLG A + P + L+HAADQA+Y+ K Sbjct: 452 LAIQALNMEHAETPDGIVTASLGIAALIPQRQQNSPQQLVHAADQALYKAK 502 >gi|134094022|ref|YP_001099097.1| hypothetical protein HEAR0777 [Herminiimonas arsenicoxydans] Length = 568 Score = 130 bits (326), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 74/187 (39%), Positives = 116/187 (62%), Gaps = 8/187 (4%) Query: 183 QRDAFQKLGRQLEAQIDSHRA-MQKL----EQQTMTDALTGIGNRRSFDSRLREEWTRHL 237 QR+A + ++LEA++ + A +Q+L EQ TDALTG+ NR + RL EE+ R Sbjct: 369 QREALAQSNQELEAKVSARTAELQELNITLEQLARTDALTGLANRMHTNERLAEEFARFK 428 Query: 238 RNARPLTMLMVDVDYFKQYNDTYGHPAGDALLVQLARVLRSPLRASDFLARYGGDEFSLI 297 R+ P +LM+DVD+FK+ ND YGH GD +L +A +L + +R +DF+ R+GG+EF I Sbjct: 429 RSKIPYCILMLDVDFFKRVNDIYGHGVGDEVLKHVASILSATVRKTDFVGRHGGEEFLSI 488 Query: 298 LPDTDEIGAHQVSERIKQSVARVKW-PHTDIEISLGAATVTPSEMCDFSALLHAADQAMY 356 LP TD A V+E+I+ ++ P ++ +S+G VT +++ + A+ AD+ MY Sbjct: 489 LPMTDSSAAMVVAEKIRNTIESTPIGPVGNLTVSIGVQEVTVNDINEDVAVTR-ADECMY 547 Query: 357 Q-RKHGR 362 Q +K GR Sbjct: 548 QAKKSGR 554 >gi|134093674|ref|YP_001098749.1| hypothetical protein HEAR0398 [Herminiimonas arsenicoxydans] Length = 475 Score = 116 bits (290), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 79/206 (38%), Positives = 110/206 (53%), Gaps = 25/206 (12%) Query: 169 LCVM--DRVARTLTPAQR-DAFQKLGRQLEAQIDSHRAMQKLEQQTMTDALTGIGNRRSF 225 +CV+ D+V L A+ LGRQ E LE++T D LTG NRR F Sbjct: 274 MCVLQTDQVDALLQEAKELITIANLGRQRE-----------LEEKTHRDVLTGAHNRRYF 322 Query: 226 DSRLREEWTRHLRNARPLTMLMVDVDYFKQYNDTYGHPAGDALLVQLARVLRSPLRASDF 285 D + E+ R PL++ +D+D+FKQ NDTYGH AGD L+ L+R++ + +R SD Sbjct: 323 DEAFKHEFAVASRQGWPLSVAFLDIDHFKQVNDTYGHAAGDKALIALSRIIATQIRGSDI 382 Query: 286 LARYGGDEFSLILPDTDEIGAHQVSERIKQSVARVKWPHT------DIEISLGAATVTPS 339 RYGG+EF L+ P T A V RI+Q+VA + HT + IS G A Sbjct: 383 FVRYGGEEFVLLFPGTVAEEALIVLNRIRQAVA--SYCHTYDTATFHLTISAGLAFHMDE 440 Query: 340 EMCDFSA--LLHAADQAMYQ-RKHGR 362 +M +A LL AD A+Y +++GR Sbjct: 441 DMKHETAEGLLRTADNALYTAKQNGR 466 >gi|134095595|ref|YP_001100670.1| hypothetical protein HEAR2418 [Herminiimonas arsenicoxydans] Length = 313 Score = 113 bits (282), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 64/165 (38%), Positives = 92/165 (55%), Gaps = 6/165 (3%) Query: 201 HRAMQKLEQQTMTDALTGIGNRRSFDSRLREEWTRHLRNARPLTMLMVDVDYFKQYNDTY 260 R + LEQ + D LTGI +R+ F+ +LR W + + L M+ +DVDYFK +NDTY Sbjct: 137 ERDKENLEQLVVHDTLTGIYSRKYFEDQLRTRWDQLIDTQESLVMMFIDVDYFKGFNDTY 196 Query: 261 GHPAGDALLVQLARVLRSPLRA-SDFLARYGGDEFSLILPDTDEIGAHQVSERIKQSVAR 319 GH AGD L ++A +L LR S+F+AR+GG+EF ++ + A +E + +SV Sbjct: 197 GHIAGDDALRKVASILDDSLRRDSEFVARFGGEEFIVLATEMTAEQAIMHAENLCRSVRD 256 Query: 320 VKWPHTD-----IEISLGAATVTPSEMCDFSALLHAADQAMYQRK 359 + PH + IS G + PS M LL AD A+YQ K Sbjct: 257 LDIPHAASPHQFLTISCGVVRMKPSSMAQPEVLLEQADSALYQAK 301 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.132 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 723,467 Number of extensions: 29322 Number of successful extensions: 132 Number of sequences better than 1.0e-08: 31 Number of HSP's gapped: 115 Number of HSP's successfully gapped: 31 Length of query: 367 Length of database: 1,000,347 Length adjustment: 83 Effective length of query: 284 Effective length of database: 726,862 Effective search space: 206428808 Effective search space used: 206428808 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)