BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0259.p (381 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 230 9e-62 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 186 2e-48 gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding pro... 166 2e-42 gi|134093702|ref|YP_001098777.1| nitrate ABC transporter ATP-bin... 136 2e-33 gi|134096584|ref|YP_001101659.1| molybdate ABC transporter ATP-b... 126 2e-30 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 230 bits (586), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 129/302 (42%), Positives = 180/302 (59%), Gaps = 12/302 (3%) Query: 1 MASISLRAAQKAYGDAPPVIRNVDLDIGEHEFCVFLGPSGCGKSTLLRSIAGLEDLTSGD 60 MA + +R + +GD V+ N+ L I EF LGPSGCGK+TLLR IAG ++ +G Sbjct: 1 MALLEIRNLTRRFGDNT-VVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAGK 59 Query: 61 LFIGGKRVNEVPSAQRSVAMVFQSYALFPHMTVYENMSFGLTLAKLPKAEIEQKVREAAR 120 + + G + VP QR V VFQ+YALFPHMTV N++F L +A PK+EI+QKV EA Sbjct: 60 ILLDGVDLTGVPPEQRVVRTVFQNYALFPHMTVAGNIAFPLEMANTPKSEIKQKVDEALE 119 Query: 121 ILQLEELLQRKPKELSGGQRQRVAIGRAIVRRPGVFLFDEPLSNLDATLRSQTRIEIARL 180 ++L R P ELSGGQRQRV+I RA+V RP + L DEPLS LDA LR Q +IE+ L Sbjct: 120 DVRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELINL 179 Query: 181 HRQFAQASVVYVTHDQVEAMTLADRIVLLHAGADTQRFGSIAQVGTPMELYHHPRNRFVA 240 ++ + VYVTHDQ EA+ L+ RI +++ G+I Q+ P +Y +PR+RFVA Sbjct: 180 QKEVG-ITFVYVTHDQAEALALSHRIAVMNK-------GNIEQLDEPTRIYSYPRSRFVA 231 Query: 241 GFIGSPRMNFLPVQVVSVQEQGILVRLSSSEETVLVAAQGQVQPGQSLTLGVRPEHMEIG 300 FIG+ N V + +L+ + + G VQ G T+ +RPE +++ Sbjct: 232 DFIGT--CNLFDGTVTQIAGDTMLLDVPGMGAVKALTVAG-VQVGSKGTIALRPEKIQVS 288 Query: 301 TQ 302 + Sbjct: 289 AE 290 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 186 bits (472), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 109/286 (38%), Positives = 163/286 (56%), Gaps = 13/286 (4%) Query: 3 SISLRAAQKAYGDAPPVIRNVDLDIGEHEFCVFLGPSGCGKSTLLRSIAGLEDLTSGDLF 62 SI ++ K +G+ + +V L+ E LGPSGCGK+TLLR IAGLE G + Sbjct: 2 SIEVKNINKKFGNFV-ALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVL 60 Query: 63 IGGKRVNEVPSAQRSVAMVFQSYALFPHMTVYENMSFGLTL----AKLPKAEIEQKVREA 118 + G+ + +R V VFQ YALF HMTV+EN++FGL + + ++ I++KV + Sbjct: 61 LDGEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESVIKEKVTKL 120 Query: 119 ARILQLEELLQRKPKELSGGQRQRVAIGRAIVRRPGVFLFDEPLSNLDATLRSQTRIEIA 178 ++QL+ L R P +LSGGQRQR+A+ RA+ P V L DEP LDA +R + R + Sbjct: 121 LELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLR 180 Query: 179 RLHRQFAQASVVYVTHDQVEAMTLADRIVLLHAGADTQRFGSIAQVGTPMELYHHPRNRF 238 RLH + S ++VTHDQ EA+ +AD+IVL++ G + Q+G P ++Y++P + F Sbjct: 181 RLHDELHVTS-IFVTHDQEEALEVADQIVLMNK-------GHVEQIGAPKDVYNNPASPF 232 Query: 239 VAGFIGSPRMNFLPVQVVSVQEQGILVRLSSSEETVLVAAQGQVQP 284 V GF+G+ + V +Q GI +T G V+P Sbjct: 233 VYGFLGNVNLFRGRVHEGVLQSSGIAFDAPDHAKTQDARGIGYVRP 278 >gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 376 Score = 166 bits (419), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 116/357 (32%), Positives = 178/357 (49%), Gaps = 26/357 (7%) Query: 19 VIRNVDLDIGEHEFCVFLGPSGCGKSTLLRSIAGLEDLTSGDLFIGGKRVNEV----PSA 74 ++ ++ + + LG SGCGK+T+LR+IAG E LT G + +GGK ++ Sbjct: 33 IVHSLSFALQRGQIGCLLGQSGCGKTTVLRAIAGFEPLTEGSITLGGKEISNAHFTATPE 92 Query: 75 QRSVAMVFQSYALFPHMTVYENMSFGLTLAKLPKAEIEQKVREAARILQLEELLQRKPKE 134 R + +VFQ YALFPH++V +N+ FGL KL E + ++ ++ L ++ P E Sbjct: 93 TRQIGVVFQDYALFPHLSVADNVGFGLR--KLAAPERQARIAALLTLVGLASQGKKFPHE 150 Query: 135 LSGGQRQRVAIGRAIVRRPGVFLFDEPLSNLDATLRSQTRIEIARLHRQFAQASVVYVTH 194 LSGGQ+QRVA+ RA+ +P + L DEP SNLD LR + E+ + ++ +V+ VTH Sbjct: 151 LSGGQQQRVALARALAPQPDLLLLDEPFSNLDVDLRERLASEVRDILKEVGTTAVL-VTH 209 Query: 195 DQVEAMTLADRIVLLHAGADTQRFGSIAQVGTPMELYHHPRNRFVAGFIGSPRMNFLPVQ 254 DQ EA +AD+I ++ G I Q + LYH P NRFVA FIG + Sbjct: 210 DQHEAFAIADQIGVMQDGV-------IVQWDSAYNLYHRPANRFVADFIG---LGVFTPG 259 Query: 255 VVSVQEQGILVRLSSSEETVLVAAQGQVQP----GQSLTLGVRPEHMEIGTQGQYGLNRE 310 ++ Q Q + + L S L P GQ + + +R + ++ L E Sbjct: 260 IIDQQTQNVNIELGS---LPLCHGMETCDPNAPDGQQVDVLLRAD--DVVHDDTSPLQAE 314 Query: 311 VMLVERLGEQTYVHLDEPAGQPLVAKAAGDARIARGERLRVSVAPNCAYLFDQEGVA 367 V+ G L P+GQ L+A A GER+ + + + F +E A Sbjct: 315 VVRKAFRGADFLYTLKLPSGQLLLALVPSHHDHALGERIGIRLEADHVVTFTKENEA 371 >gi|134093702|ref|YP_001098777.1| nitrate ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 271 Score = 136 bits (342), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 126/222 (56%), Gaps = 15/222 (6%) Query: 20 IRNVDLDIGEHEFCVFLGPSGCGKSTLLRSIAGLEDLTSGDLFIGGKRVNEVPSAQRSVA 79 + +++L + + EF +G SGCGKSTLL IAGL T G L G + + PS +R+V Sbjct: 28 LTDINLTVAKGEFITLIGHSGCGKSTLLNLIAGLTQSTGGMLLCGNREIAG-PSPERAV- 85 Query: 80 MVFQSYALFPHMTVYENMSFGL--TLAKLP-KAEIEQKVREAARILQLEELLQRKPKELS 136 VFQ+++L P +T YEN+ + K+ KA++ + R A ++ L Q++P E+S Sbjct: 86 -VFQNHSLLPWLTCYENVYLAVERVFGKVEGKAKLRARTRAALSLVGLTHAEQKRPNEIS 144 Query: 137 GGQRQRVAIGRAIVRRPGVFLFDEPLSNLDATLRSQTRIEIARLHRQFAQASVVYVTHDQ 196 GG +QRV I RA+ P V L DEP LDA R+ + E+ ++ ++VV VTHD Sbjct: 145 GGMKQRVGIARALSMEPKVLLMDEPFGALDALTRAHLQDELLKI-VAATGSTVVMVTHDV 203 Query: 197 VEAMTLADRIVLLHAGADTQRFGSIAQVGTPMEL-YHHPRNR 237 EA+ L+D+IV+L G A +G +E+ HPR R Sbjct: 204 DEAVLLSDKIVMLTNGPS-------ATIGEILEVKLAHPRER 238 >gi|134096584|ref|YP_001101659.1| molybdate ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 362 Score = 126 bits (316), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 75/197 (38%), Positives = 107/197 (54%), Gaps = 9/197 (4%) Query: 22 NVDLDIGEHEFCVFLGPSGCGKSTLLRSIAGLEDLTSGDLFIGGKRVNE------VPSAQ 75 VDL + G SG GK+T LR IAGLE L + G+ + +P+ Q Sbjct: 22 TVDLALPGRGITALFGASGSGKTTCLRVIAGLERAADVYLEVNGEVWQDDAHNIFLPTHQ 81 Query: 76 RSVAMVFQSYALFPHMTVYENMSFGLTLAKLPKAEIEQKVREAARILQLEELLQRKPKEL 135 R + VFQ +LF H+ V N+ +G+ ++ K+ + A +L + LLQRKP +L Sbjct: 82 RPLGYVFQEASLFAHLNVQRNLEYGMR--RIAKSARHVSLDHAVSLLDIGHLLQRKPDKL 139 Query: 136 SGGQRQRVAIGRAIVRRPGVFLFDEPLSNLDATLRSQTRIEIARLHRQFAQASVVYVTHD 195 SGG+RQRVAI RA+ P + L DEPL+ LDA +++ + RLH + V+YV+H Sbjct: 140 SGGERQRVAIARALATSPRILLMDEPLAALDAKRKAEIMPYLERLHDEL-DIPVLYVSHS 198 Query: 196 QVEAMTLADRIVLLHAG 212 E LAD +VLL G Sbjct: 199 ADEVARLADHLVLLETG 215 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.135 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 681,773 Number of extensions: 27342 Number of successful extensions: 247 Number of sequences better than 1.0e-08: 45 Number of HSP's gapped: 178 Number of HSP's successfully gapped: 47 Length of query: 381 Length of database: 1,000,347 Length adjustment: 83 Effective length of query: 298 Effective length of database: 726,862 Effective search space: 216604876 Effective search space used: 216604876 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)