BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0255.p
         (283 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096009|ref|YP_001101084.1| spermidine/putrescine ABC trans...    79   2e-16

>gi|134096009|ref|YP_001101084.1| spermidine/putrescine ABC
           transporter inner membrane protein [Herminiimonas
           arsenicoxydans]
          Length = 258

 Score = 79.3 bits (194), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 92/187 (49%), Gaps = 16/187 (8%)

Query: 35  ALVTSMRSNDELMAGNYWGWPQDFAMLENYREALTGSPMLHYFWNSCLITIPSVVGAIAL 94
           A+V     ND  +   + G+  D+     YR       ML    NS +I + S   +  L
Sbjct: 26  AIVVMYSFNDSRLNAEWVGFTLDW-----YRVLFADEEMLRAAGNSLIIALVSSAVSTVL 80

Query: 95  AAMAGFALSTYQFRGNTILFATFVACNFVPQQI----LMIPVRDLTLSLGLFNTITGMML 150
             MAGFAL  Y+ R   IL  T +A   +P+ +    L+I    L ++LG+ +    +ML
Sbjct: 81  GTMAGFALHRYKIRTLQILVLTPIA---IPEILVGVSLLIFFVMLNITLGMLS----VML 133

Query: 151 FHIAMQTGFCTLFLRNFIKQLPFEMIEAARIEGASEWTVFYRIVLPLIRPALAALAVLVF 210
            HIA   GF  + +R+ +  +   + EAAR  GA+ W  F R+ LPLI P + A A++ F
Sbjct: 134 AHIAFSLGFVAIVVRSRLSGMDESLTEAARDCGATPWQAFRRVTLPLIMPGVVAGALMAF 193

Query: 211 TFVWNDY 217
           T   +D+
Sbjct: 194 TLSIDDF 200


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.330    0.140    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 487,465
Number of extensions: 16889
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 202
Effective length of database: 733,452
Effective search space: 148157304
Effective search space used: 148157304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 128 (53.9 bits)