BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0253.p (1047 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095880|ref|YP_001100955.1| aminoglycoside/multidrug efflux... 227 3e-60 gi|134094275|ref|YP_001099350.1| multidrug ABC transporter membr... 206 3e-54 gi|134093332|ref|YP_001098407.1| putative acriflavin resistance/... 197 2e-51 gi|134096396|ref|YP_001101471.1| RND family outer membrane coppe... 189 8e-49 gi|134094813|ref|YP_001099888.1| RND divalent metal cation efflu... 184 2e-47 >gi|134095880|ref|YP_001100955.1| aminoglycoside/multidrug efflux pump [Herminiimonas arsenicoxydans] Length = 1049 Score = 227 bits (578), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 262/1036 (25%), Positives = 469/1036 (45%), Gaps = 78/1036 (7%) Query: 22 FILALVTLL-GIGSYSRLSQSEDPPFTFKVMVIQTDWPGATARQVQEQITDRIARKLQET 80 ++LA+ +L G + + L S+ P +VI +PGATA+ + + +T I +++ Sbjct: 13 WVLAIFIMLAGALAITSLPVSQYPNIAPPTIVITATYPGATAQTLDDSVTSLIEQEMNGA 72 Query: 81 PDVDFLRSYSRP-GQSQLFFTIKDTAPASQVPQTWYQVRKKVGDMAATLPQGV--KGPYF 137 + ++ S S+ GQ Q+ T +P + V ++ + A LP V +G Sbjct: 73 DGLQYVESQSQANGQVQITVTF---SPETNPDLAAVDVSNRLKRVEARLPAAVTQQGVQV 129 Query: 138 NDEFGDVYTNIYALAGDG-FTPAQLRDY-ADQLRAELLHVPGVAKIDYFG-DRQEHIYID 194 + I + DG P L DY + + E+ VPGV + FG +R I+ID Sbjct: 130 AKARSNFLMFIGLSSTDGRLDPVALGDYLSRNVLNEVKRVPGVGQAQLFGTERAMRIWID 189 Query: 195 IGNARMTRLGISPQQLADAIGGQNAVVPGGLI----TTGSDRVY--VRPTGQFENLRALE 248 ++ L ++P ++ AI QNA+V GG++ + S ++ V GQ + Sbjct: 190 --PNKLVGLNLTPAEVTAAINTQNALVAGGILGDLPSPSSQQISATVVVNGQLSSPEEFG 247 Query: 249 EKIIHINN--HNFRLGDIATIHRGYDEPQEQEMRANGQPVLGIGVTMQPGGDVIRLGKAL 306 + I+ N + RL D+A I G + + R +G P IGV + P + + A+ Sbjct: 248 KIILRANKDGSSVRLRDVARIEVG-GQSYQTSGRLDGNPTSFIGVQLSPTANALGTATAV 306 Query: 307 DERTEQLRKRLPAGLTLTAVSSMPHAVEKSVDEFLEAVAEAVAIVLVVSLLSL-GIRTGM 365 ++ E L + PAG+ T V+ S++E ++ + EA+ +V +V L L IR + Sbjct: 307 HKKMEDLARYFPAGVKYTVPYDTSKFVKISIEEVVKTLIEAIILVFLVMYLFLQNIRYTL 366 Query: 366 VVVISIPIVLAVTALFMYLFDIGLHKVSLGTLVLALGLLVDDAIIAVEMMA-VKLEQGWN 424 + I +P+ L T + +F ++ +++ +VLA+G+LVDDAI+ VE + + E+G + Sbjct: 367 IPTIVVPVALLGTFATLLVFGFSINVLTMFGMVLAIGILVDDAIVVVENVERIMSEEGLS 426 Query: 425 RHRAAAFAYTSTAFPMLTGTLVTVAGFLPIALAKSGTGEYTRSIFEVSAIA-LLLSWLAA 483 A A ++ TLV +A FLP+A G R F +S +A ++ S L A Sbjct: 427 PRDATRKAMGQITGAIIGITLVLIAVFLPMAFFGGAVGAIYRQ-FSLSMVASMVFSALMA 485 Query: 484 VVLIPLLGYHMLKEKPGALSDEQIAAQPHAGHDEEDHDHPIYQTRVYTLLRRAVAWCVAF 543 L P L +LK GH E + R++ + ++++ F Sbjct: 486 FTLTPALCATILKPV-------------EKGHHHEKGGFFGWFNRIFH--KTSLSYQ-GF 529 Query: 544 RGRVVILTTVLFI--GSLAA-----FALVPQQFFPSSDRPELLIDLRLPERASFEATQRE 596 G+++ TT I G + A +A +P F PS D+ ++ +++LP AS T Sbjct: 530 IGKMLTKTTRYMIVYGLIVACVGLLYARLPASFLPSEDQGYIITNVQLPAGASSGRTLEV 589 Query: 597 TIRMEALLKGRPQIDHYVSFVGVGAPRFYLPLDQQLASANFAQFVVTAKSVEDREALARA 656 ++E +P ++H +S G F + Q A F F+ +K +E A A Sbjct: 590 LKQIEEYYLKQPAVEHVISISG-----FSFSGNGQNAGLVFTPFIDWSK--RGKEDTADA 642 Query: 657 LEEPLRKQFSGARTRLTRLENGPPV-------GFPVQFRISGEQIPKVRAIAEQVAAELR 709 + FS + + N PP+ GF + + G A + Sbjct: 643 IAGRAFGAFSQIKDAIVFPLNPPPIRELGNATGFTFRLQDRGGLGHDALVAARNQLLGMA 702 Query: 710 KESRA-TNIQFDWDEPAQRSVSFEIDQKRAAELGLSSQQISNFLAMQLSGFTVTQY--RE 766 +S+ ++ + E A + + +ID+ +A LG+ I++ L+ L V + + Sbjct: 703 GQSKILAGVRPEGLEDAPQ-LQLDIDRDKANALGVPFASINSVLSTSLGSSYVNDFPNQG 761 Query: 767 RDKLISVDLRAPRSERVDPARLATLSMPTTHGP-VPLATLGRFHDTLEYGVIWERDRQPT 825 R + + V APR + D L L +T G VP ++ + + P Sbjct: 762 RQQRVIVQADAPRRLQAD--DLTKLYARSTTGAMVPFSSFITSKWITGPVQLIRYNGYPA 819 Query: 826 ITVLADVRPGVQGIDVTNAVNQKLDALRSELPVGYRINVGGPVEENAKAQSSISAQMPLM 885 + + V+PG T ++++AL +LP G G E + + A L Sbjct: 820 MKISGGVKPGFS----TGDAMKEMEALVQKLPAGIGYEWTGQSLEEQTSGNQAPALYALS 875 Query: 886 VIAVLLLLMVQLQSFGRTLMVVMTAPLGLIGVVAALLLFGQPFGFVAMLGTIAMLGIIMR 945 +IAV L+L +S L V++ PLG++G + + L G P +G IA++G+ + Sbjct: 876 LIAVFLVLAALYESTSIPLSVMLVVPLGILGALLGVTLRGMPNDVYFKVGMIAVVGLSAK 935 Query: 946 NSVILVDQIEQDIAAGRGRFDAIVGATVRRFRPITLTAAAAVLALIPLLRSNFFGP---- 1001 N++++++ + A G+G +A + A RFRPI +T+ A +L ++PL+ ++ G Sbjct: 936 NAILIIEFAKDLQAQGKGLIEATLEAVHLRFRPIIMTSLAFILGVLPLVIASGAGSASQR 995 Query: 1002 -MATALMGGITIATIL 1016 + T +MGG+ AT+L Sbjct: 996 AIGTGVMGGMITATVL 1011 >gi|134094275|ref|YP_001099350.1| multidrug ABC transporter membrane protein [Herminiimonas arsenicoxydans] Length = 1034 Score = 206 bits (525), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 235/1058 (22%), Positives = 455/1058 (43%), Gaps = 68/1058 (6%) Query: 7 FNLSAWTLKHQALVTFILALVTLLGIGSYSRLSQSEDPPFTFKVMVIQTDWPGATARQVQ 66 N+S ++ + + V ++G Y +L + P + V+ + PGA+ + Sbjct: 1 MNISELCIRRPVMTVLLSIAVVVVGFFCYFKLPIAALPSYDTPVINVTASLPGASPEVMA 60 Query: 67 EQITDRIARKLQETPDVDFLRSYSRPGQSQLFFTIKDT----APASQVPQTWYQVRKKVG 122 + + ++ V + S S G + + A A V + ++ + Sbjct: 61 SSVATPLEKQFSTIAGVATISSSSTLGNTSIVLEFDQNRDIDAAAVDVQAALLRAQRSLP 120 Query: 123 DMAATLPQGVK-GPYFNDEFGDVYTNIYALAGDGFTPAQLRDYADQLRA-ELLHVPGVAK 180 + LP K P T+ + ++L DYA+ L + L + GVA+ Sbjct: 121 EEMNDLPAYRKVNPADAAILLLALTS------PSLSLSELNDYAENLISPSLSTIDGVAQ 174 Query: 181 IDYFGDRQEHIYIDIGNARMTRLGISPQQLADAIGGQNAVVPGGLITTGSDRVYVRPTGQ 240 + +G R+ + I + + + ++ ++A +I NA P G++ + ++ Q Sbjct: 175 VQVYGQRRYAVRIKVKPSELAARNMTLDEIAASIRAANANSPVGVLDGPRQTLTLQANRQ 234 Query: 241 FENLRALEEKIIHINN-HNFRLGDIATIHRGYDEPQEQEMRANGQPVLGIGVTMQPGGDV 299 +N A +I + RL D+AT+ + + NG+P + + V QP + Sbjct: 235 LQNAEAFGNLVISSSKGQTTRLKDVATVEDSVESTKSGSW-VNGKPSIVLAVQRQPNANT 293 Query: 300 IRLGKALDERTEQLRKRLPAGLTLTAVSSMPHAVEKSVDEFLEAVAEAVAIVLVVSLLSL 359 + + A+ + ++PA + L ++ ++ +++ + + + +V++V L L Sbjct: 294 VAVVDAVKHTLPLFQSQMPASIDLQVLNDRSVSIREAIHDVKLTLLLTILLVVLVIFLFL 353 Query: 360 GIRTGMVV-VISIPIVLAVTALFMYLFDIGLHKVSLGTLVLALGLLVDDAIIAVEMMAVK 418 T + V+S+PI L MY L VSL + +A+GL+VDDAI+ +E + Sbjct: 354 KRLTATAIPVLSLPISLIGCCALMYWMGFSLDNVSLLGITIAVGLVVDDAIVMLENIVRH 413 Query: 419 LEQGWNRHRAAAFAYTSTAFPMLTGTLVTVAGFLPIALAKSGTGEYTRSIFEVSAIALLL 478 +E G AA +F +++ ++ VA F+PI G V ++A+L+ Sbjct: 414 IEDGMEPLAAALKGSREVSFTIISISISLVAVFIPIFFMPGVIGLLLHEFAAVVSLAVLV 473 Query: 479 SWLAAVVLIPLLGYHMLK-EKPGALSDEQIAAQPHAGHDEEDHDHPIYQTRVYTLLRRAV 537 S + ++ L+P+L LK EK G +D A QP + R+ RA+ Sbjct: 474 SAVMSLTLVPMLCSRFLKHEKAGHEND---AVQPQENWLIRSFEKVF--NRLLASYTRAL 528 Query: 538 AWCVAFRGRVVILTTVLFIGSLAAFALVPQQFFPSSDRPELLIDLRLPERASFEATQRET 597 W +A R +++L F+ + F +P+ FFP+ D ++ + + P+ AS+ + Sbjct: 529 DWSLAHRTTMLVLAAGTFVLTAYLFITIPKGFFPTEDIGQISVTIEGPQDASYPTMVKLV 588 Query: 598 IRMEALLKGRPQIDHYVSFVGVGAPRFYLPLDQQLASANFAQFVVTAKSVEDRE---ALA 654 + +++ P ++ + +N V K RE A+ Sbjct: 589 TAVGTIIQNDPNVETAT---------------MRTRDSNVGNMFVGLKPRTAREPMDAVL 633 Query: 655 RALEEPLRKQFSGARTRLTRLEN----GPPVGFPVQFRISGEQIPKVRAIAEQVAAELRK 710 R L + K G LT ++N G Q+ + + ++ AE++ AE+R Sbjct: 634 RGLRAKV-KAVPGVTVYLTPVQNLRLGGRTSKSQFQYVLQSVRADELNVWAEKIQAEMRA 692 Query: 711 ESRATNIQFDWDEPAQRSVSFEIDQKRAAELGLSSQQISNFLAMQLSGFTVTQYRERDKL 770 + ++ D ++V +I++ RA E G+ I L V+ Sbjct: 693 DGSFIDVTSDSQLKGLQAV-VDINRDRANEAGVGIADIRTALYSAYGDRQVSTIYTSSNS 751 Query: 771 ISVDLRAPRSERVDPARLATLSMPTTHGP-VPLATLGRFHDTLEYGVIWERDRQPTITVL 829 SV L+ R D + L+ + + + G VPL ++ T + + + IT+ Sbjct: 752 YSVILQDESVGRQDESDLSKIYLRSKTGVLVPLLSVATVKRTAGPISVNHQGQLQAITIS 811 Query: 830 ADVRPGVQGIDVTNAVNQKLDALRSELPVGYRINVGGPVEENAKAQSSISAQMPLMVIA- 888 ++ PG+ D T V+Q DA+ LP N G + A QSS ++Q+ L+V+A Sbjct: 812 FNLAPGIPLGDATRKVDQIKDAI--SLPSSIVTNYAG---DAAVFQSSQASQIALVVLAL 866 Query: 889 --VLLLLMVQLQSFGRTLMVVMTAPLGLIGVVAALLLFGQPFGFVAMLGTIAMLGIIMRN 946 + +LL V +S+ + ++ P +G + L +FG +AM+G + ++G++ +N Sbjct: 867 VVIYILLGVLYESYIHPVTILAGLPSAAVGALLTLRIFGFELTMIAMIGILLLIGLVKKN 926 Query: 947 SVILVD-----QIEQDIAAGRGRFDAIVGATVRRFRPITLTAAAAVLALIPLLRSNFFG- 1000 +++++D Q EQ G +AI A + RFRPI +T AA + +P+ G Sbjct: 927 AIMMIDFALAAQREQ----GLTPLEAIRTACILRFRPIMMTTLAAAVGALPIALGLGAGA 982 Query: 1001 ----PMATALMGGITIATILTLFYLPALYALCYRVKPD 1034 P+ A++GG+ ++ ++TL P +Y R D Sbjct: 983 ELRQPLGLAVVGGLMVSQVITLLITPVIYLFLDRFSGD 1020 >gi|134093332|ref|YP_001098407.1| putative acriflavin resistance/multidrug efflux transporter AcrB [Herminiimonas arsenicoxydans] Length = 1024 Score = 197 bits (502), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 242/1033 (23%), Positives = 431/1033 (41%), Gaps = 75/1033 (7%) Query: 22 FILALVTLLGIGSYSRLSQSEDPPFTFKVMVIQTDWPGATARQVQEQITDRIARKLQETP 81 + L+ L G+ S+ + + P ++ + GA Q++ ++ +I + Sbjct: 1 MLFVLLGLAGLLSFKSAAVQDFPDIELPIVTVSAALSGAAPAQLETEVARKIEDSVATLQ 60 Query: 82 DVDFLRSYSRPGQSQL---FFTIKDTAPASQVPQTWYQVRKKVGDMAATLPQGVKGPYFN 138 V + + G + F K+ + A VR V + A LP ++ P Sbjct: 61 GVKNIYTKVLDGLVTVTVEFILEKNLSDAVN------DVRDAVASVRADLPAELRDPTVT 114 Query: 139 --DEFGDVYTNIYALA--GDGFTPAQLRDYADQ-LRAELLHVPGVAKIDYFGDRQEHIYI 193 G V A A G +L + D + +L VPG+ + G + + Sbjct: 115 KASTAGRVVLTFTAAAAPGSALDEQELSWFVDNTVSKAILAVPGIGAVKRVGGVTREVRV 174 Query: 194 DIGNARMTRLGISPQQLADAIGGQNAVVPGGLITTGSDRVYVRPTGQFENLRALEEKIIH 253 ++ A+M L ++ ++ + PGG VR + L I Sbjct: 175 ELDTAKMAALNVAAVDVSRRLKLVQQEAPGGRGDVSGAEQSVRTIATVQTAAELAAMDIP 234 Query: 254 I-NNHNFRLGDIATIHRGYDEPQEQEMRANGQPVLGIGVTMQPGGDVIRLGKALDERTEQ 312 + + H+ RL +AT+ E + +G+ V+G + G + + Sbjct: 235 LADGHHIRLDRVATVTDTIAE-RRSSASQDGKTVVGFEIFRTKGASELEVANGSRAAVAA 293 Query: 313 LRKRLPAGLTLTAVSSMPHAVEKSVDEFLEAVAE-----AVAIVLVVSLLSLGIRTGMVV 367 L++R P + A+ + K V+E EA E A VLVV R +V Sbjct: 294 LQERYPNVVFKLAIDN-----AKPVEENFEASMELLYEGAFLAVLVVWWFLRDWRATLVA 348 Query: 368 VISIPIVLAVTALFMYLFDIGLHKVSLGTLVLALGLLVDDAIIAVEMMAVKLEQGWNRHR 427 ++P+ + T L + F L+ V+L +L L +G+LVDDAI+ +E ++ L G + Sbjct: 349 AAALPLSVIPTFLGLAYFGYTLNMVTLLSLALVVGVLVDDAIVEIENISRHLRMGKTPMQ 408 Query: 428 AAAFAYTSTAFPMLTGTLVTVAGFLPIALAKSGTGEYTRSIFEVSAIALLLSWLAAVVLI 487 AA A ++ T VA FLP A G + + + +A+L S L A +L Sbjct: 409 AAMEAADEIGMAVIATTFALVAVFLPTAFMAGIPGLFFKQFGWTAVLAILASLLVARLLT 468 Query: 488 PLLGYHMLKEKPGALSDEQIAAQPHAGHDEEDHDHPIYQTRVYTLLRRAVAWCVAFRGRV 547 P++ ++LK P A +E+D R +R WC+ R Sbjct: 469 PMMAAYILK--------------PTAHREEKDG---WLMQRYLKTMR----WCLTHRLTT 507 Query: 548 VILTTVLFIGSLAAFALVPQQFFPSSDRPELLIDLRLPERASFEATQRETIRMEALLKGR 607 I + + F GS+ L+P F P++DR + I++ LP ++ T + + Sbjct: 508 AIASGIFFFGSIMLVPLLPTGFVPAADRAQTQINVELPPGSTLAETTTVVEAVRTKIAEN 567 Query: 608 PQIDHYVSFVGVGAP-RFYLPLDQQLASANFAQFVVTAKSVEDREALARALEEPLRKQFS 666 I + +G G+ + P A A A +T DR+ +E +R + Sbjct: 568 KNIKSVFASIGGGSSGDAFAP--GASAEARRAVLTITTTHRSDRKEKMAEIEAQIRTAIA 625 Query: 667 ---GARTRLTRLENGPP-VGFPVQFRISGEQIPKVRAIAEQVAAELRKESRATNIQFDWD 722 GAR + GPP G +Q + E + A++V ELR N+ Sbjct: 626 DIPGARFTV-----GPPDTGVKMQLVLRSEDPVALLTTAQKVERELRTLKGIGNVNSS-A 679 Query: 723 EPAQRSVSFEIDQKRAAELGLSSQQISNFLAMQLSG---FTVTQYRERDKLISVDLRAPR 779 + + D RAA+LG+++ I + + +G ++ + ++ + + ++ P Sbjct: 680 SLVRPEIIVRPDSARAADLGVTAASIGETVRVATAGDYDTSLPKMNLSERQVPIRVKLPD 739 Query: 780 SERVDPARLATLSMPTTHGPVPLATLGRFHDTLEYG--VIWERDRQPTITVLADVRPGVQ 837 R D + + L++P +GPV L + T+E G I +R +T DV G + Sbjct: 740 DVRADLSAIERLTVPGKNGPVMLGNVATV--TMESGPAQIDRLNRSRNVTF--DVELGTR 795 Query: 838 GIDVTNAVNQKLDALRSELPVGYRINVGGPVEENAKAQSSISAQMPLMVIAVLLLLMVQL 897 + NA + L L++ LP +I G +E +S M + V+ + +L++ Sbjct: 796 SLGDLNAEARALPTLQN-LPPAVKIAELGDAQEMQALFNSFGLAMAIGVLCIYGVLVLLF 854 Query: 898 QSFGRTLMVVMTAPLGLIGVVAALLLFGQPFGFVAMLGTIAMLGIIMRNSVILVDQIEQD 957 + F + + ++ PL + G ALLL +M+G I ++GI+ +NS++LVD Sbjct: 855 KDFMQPVTILAALPLSIGGAFVALLLTRSALSMPSMIGLIMLMGIVTKNSILLVDYAILA 914 Query: 958 IAAGRGRFDAIVGATVRRFRPITLTAAAAVLALIPLLRS-----NFFGPMATALMGGITI 1012 AG R DA+V A +R RPI +T A ++PL +F PMA ++GG+ Sbjct: 915 RKAGMNRVDALVDACHKRSRPIVMTTIAMGAGMLPLALGWVGDPSFRSPMAITVIGGLIT 974 Query: 1013 ATILTLFYLPALY 1025 +T+L+L +PA++ Sbjct: 975 STLLSLLVVPAVF 987 >gi|134096396|ref|YP_001101471.1| RND family outer membrane copper/silver/drug transport protein [Herminiimonas arsenicoxydans] Length = 1073 Score = 189 bits (479), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 248/1071 (23%), Positives = 454/1071 (42%), Gaps = 91/1071 (8%) Query: 11 AWTLKHQALVTFILALVTLLGIGSYSRLSQSEDPPFTFKVMVIQTDWPGATARQVQEQIT 70 AW+++++ +V ++ ++GI S SRL+ P + ++++TD+PG + V++Q+T Sbjct: 7 AWSIRNRLVVLVASLILIVVGIESLSRLALDALPDLSDVQVIVKTDFPGQAPQFVEDQVT 66 Query: 71 DRIARKLQETPDVDFLRSYSRPGQSQLFFTIKDTAPASQVPQTWYQVRKKVGDMAATLPQ 130 +A L P +R +S G+S ++ KD + + ++ + + +A LP Sbjct: 67 YPLAASLLSVPGTKAVRGFSMFGESYVYVIFKD---GTDIYWARSRILENLSQVAGRLPA 123 Query: 131 GVKGPYFNDEFGDVYTNIYALAG-DGFTPAQ-LRDYAD-QLRAELLHVPGVAKIDYFGDR 187 G + D G + YAL G TP + LR D L+ EL VPGVA++ G Sbjct: 124 GAQPTLGPDASGVGWVYEYALLDRSGHTPVEKLRALQDFYLKLELQSVPGVAEVASLGGM 183 Query: 188 QEHIYIDIGNARMTRLGISPQQLADAIGGQNAVVPGGLITTGSDRVYVRPTGQFENLRAL 247 +D+ R+ + Q+A A+ N G VR G N Sbjct: 184 ARQFQVDVDPVRLAAHNLDLGQVAQAVKNSNQSSGGAAFEMARAEYLVRSNGYLRNTADF 243 Query: 248 EEKIIHINN--HNFRLGDIATIHRGYDEPQEQ----EMRANGQPVLGIGVTMQPGGDVIR 301 ++ + ++ + RL +A + G PQ + E+ G+ GI V M+ G + + Sbjct: 244 DDIPVMTDSAGNVIRLKQVANLTVG---PQPRRGIAELDGKGEVTGGI-VVMRHGENALT 299 Query: 302 LGKALDERTEQLRKRLPAGLTLTAVSSMPHAVEKSV----DEFLEAVAEAVAIVLVVSLL 357 + + R E+L+K LP G+ + +E++V D+ LE E++A+ L+ + Sbjct: 300 TIRGVKARLEELKKGLPPGVEIVPTYDRSGLIERAVHTLRDKLLE---ESLAVALICGIF 356 Query: 358 SLGIRTGMVVVISIPIVLAVTALFMYLFDIGLHKVSLGTLVLALGLLVDDAIIAVEMMAV 417 R+ +V ++++PI + V M L + + +SLG + +A+G +VD AI+ +E M Sbjct: 357 LFHFRSSLVAIVTLPIGILVALWIMRLQGVSANIMSLGGIAIAVGAMVDAAIVMIENMHR 416 Query: 418 KLEQ---------GWNRHRAAAFAYTSTAFPMLTGTLVTVAGFLPIALAKSGTGEYTRSI 468 LE+ W+ R +A T + LV FLP+ + Sbjct: 417 HLEKIPLAQQREDVWDIVRQSA---TEVGPALFFSLLVITLSFLPVFTLTGQEARLFTPL 473 Query: 469 FEVSAIALLLSWLAAVVLIP-LLGYHMLKEKPGALSDEQIAAQPHAGHDEEDHDHPIYQT 527 A+ + + A+ L P L+GY + P P + + IYQ Sbjct: 474 AYTKTYAMAAAAMLAITLTPVLMGYAIRGRIP-----------PESANPLNRVLKRIYQP 522 Query: 528 RVYTLLRRAVAWCVAFRGRVVILTTVLFIGSLAAFALVPQQFFPSSDRPELL-IDLRLPE 586 ++ LR +A V +LT + L + +F P D +LL + LP Sbjct: 523 ALHAALRHPKMILLA--AAVSLLTLAFPLSQLGS------EFMPPLDEGDLLYMPTTLPG 574 Query: 587 RASFEATQRETIRMEALLKGRPQIDHYVSFVGVGAPRFYLPLDQQLASANFAQFVVTAKS 646 ++ EA R + L+ P+++ G R D S ++ +S Sbjct: 575 ISADEAADILR-RTDQLIAAMPEVERVFGKAG----RAETATDPAPLSMLETTIILKPRS 629 Query: 647 VEDREALARALEEPLRKQFSGA----------RTRLTRLENGPPVGFPVQFRISGEQIPK 696 + + L E L + A +TR+ L G + P+ +ISG + + Sbjct: 630 EWPAGSTKQGLIEKLDQTVRLAGLTNSWGYPIKTRIDMLSTG--IRTPLGIKISGPDMAQ 687 Query: 697 VRAIAEQVAAELRKESRATNIQFDWDEPAQRSVSFEIDQKRAAELGLSSQQISNFLAMQL 756 + ++ + + LR T F A R V +ID+++AA GLS I + + Sbjct: 688 LERLSIDIESALRAVP-GTRSVFAERIGAGRYVDIDIDRQQAARYGLSVADIQSVTESAV 746 Query: 757 SGFTVTQYRERDKLISVDLRAPRSERVDPARLATLSMPTTHGP-VPLATLGRFHDTLEYG 815 G T+ + + + LR RS+R P L + + G + L + R H + Sbjct: 747 GGQTIGTIIDGRERFPITLRYSRSDRDSPRALGDIRIKAPSGALIMLRDVARVHVSDGPT 806 Query: 816 VIWERDRQPTITVLADVRPGVQGIDVTNAVNQKLDALRSELPVGYRINVGGPVEENAKAQ 875 I + +P V D+ G A Q LD + + GY ++ G + Sbjct: 807 EIKSENARPVAYVFIDLATPDAG-RYLEAAQQVLDQ-KIKFGTGYTMSWQGQYLNYQNGK 864 Query: 876 SSISAQMPLMVIAVLLLLMVQLQSFGRTLMVVMTAPLGLIGVVAALLLFGQPFGFVAMLG 935 + + + L ++ V+ LL + ++ + +V++ P LIG + + L G ++G Sbjct: 865 PRLWSAVALTLLLVMALLFLHFRNAVKVGLVLLCLPFSLIGGLWFIYLLGYQLSVAVIIG 924 Query: 936 TIAMLGIIMRNSVILVDQIEQDIAA---GRGRFD------AIVGATVRRFRPITLTAAAA 986 IA+ G+ ++++ ++Q +AA + R D AI+ + R RP +T A Sbjct: 925 LIALSGVAAEFGIVMLLYLDQALAALKEQKARIDDADLLSAIISGALLRLRPKAMTVAVI 984 Query: 987 VLALIPLLRSNFFGP-----MATALMGGITIATILTLFYLPALYALCYRVK 1032 + L+P++ S+ G +A L+GG+ A + +L +PA Y L +R + Sbjct: 985 LGGLLPVMFSDEAGADVMKRIAAPLIGGMISAPLFSLIVIPAFYLLIHRYQ 1035 >gi|134094813|ref|YP_001099888.1| RND divalent metal cation efflux transporter [Herminiimonas arsenicoxydans] Length = 1064 Score = 184 bits (467), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 258/1085 (23%), Positives = 472/1085 (43%), Gaps = 88/1085 (8%) Query: 12 WTLKHQALVTFILALVTLLGIGSYSRLSQSEDPPFTFKVMVIQTDWPGATARQVQEQITD 71 + + + LV + + LGI +Y +L P T + I + PG + + +++IT Sbjct: 8 FAIDQRWLVMLMTIGIAALGIYNYQKLPIDAVPDITNVQVQINSSAPGYSPLEAEQRITF 67 Query: 72 RIARKLQETPDVDFLRSYSRPGQSQLFFTIKDTAPASQVPQTWYQVRKKVGDMAATLPQG 131 I + P ++ RS SR G SQ+ K+ + + V +++ + LP G Sbjct: 68 PIETVMAGLPFLEQTRSISRYGLSQVTVIFKE---GTDIYFARQMVNERIQEAREKLPPG 124 Query: 132 VK---GPYFNDEFGDVY-----TNIYALAGDG--FTPAQLRDYADQL-RAELLHVPGVAK 180 V GP + G++Y + AL DG +TP LR+ D + + +L +VPGV + Sbjct: 125 VNPGMGP-ISTGLGEIYMWTVESKPGALKPDGKPYTPTDLREIQDWIIKPQLRNVPGVTE 183 Query: 181 IDYFGDRQEHIYIDIGNARMTRLGISPQQLADAIGGQNAVVPGGLITTGSDRVYVRPTGQ 240 I+ G + + ++ G+S L A+ N V G I ++ +R GQ Sbjct: 184 INTIGGNAKEFQVAPFPDKLIAHGLSLGDLVSALERNNNNVGAGYIEKRGEQYLIRAPGQ 243 Query: 241 FENLRALEEKIIHINNH-NFRLGDIATIHRGYDEPQEQEMRANGQPVLGIGVTMQPGGDV 299 +L + +I R+ D+A + G E + NG+ V+ V M G + Sbjct: 244 VADLNDIGNIVISTRQGVPLRIRDVADVVIG-KELRTGAATENGKEVVLGTVFMLIGENS 302 Query: 300 IRLGKALDERTEQLRKRLPAGLTLTAVSSMPHAVEKSVDEFLEAVAEAVAIVLVVSLLSL 359 + A+D++ +++ + LP G+ V V+K++ + + E +V+ + L L Sbjct: 303 RSVAAAVDKKMKEINRSLPKGIVADTVYDRTVLVDKAISTVKKNLMEGALLVIAILFLFL 362 Query: 360 G-IRTGMVVVISIPIVLAVTALFMYLFDIGLHKVSLGTLVLALGLLVDDAIIAVEMMAVK 418 G IR ++ + IP+ + T M + + +SLG L G+++D A++ VE + Sbjct: 363 GNIRAAIITAMVIPLAMLFTFTGMVGNKVSANLMSLGAL--DFGIIIDGAVVIVENCIRR 420 Query: 419 LEQGW---------NRHRAAAFAYTSTAF-PMLTGTLVTVAGFLPIALAKSGTGEYTRSI 468 L N FA + A P++ G L+ + +LPI G+ + Sbjct: 421 LSHAQAHAGRALTRNERFHEVFAASKEARRPLIFGQLIIMVVYLPIFALSGVEGKMFHPM 480 Query: 469 FEVSAIALLLSWLAAVVLIPLLGYHMLKEKPGALSDEQIAAQPHAGHDEEDHDHPIYQTR 528 IAL+ + + ++ IP ++ +K E+++ ++ R Sbjct: 481 AFTVVIALVGAMILSLTFIPAAVALLIGDK----------------VSEKENRLMVWSKR 524 Query: 529 VYTLLRRAVAWCVAFRGRVVILTTVLFIGSLAAFALVPQQFFPSSDRPELLID-LRLPER 587 Y + + W + + V+ + V+ + S + +F PS + ++ + +R+P Sbjct: 525 RYEPI---LDWVMLSKPLVLTMVAVVIVLSGLLMTRMGSEFIPSLNEGDIALHAMRIPGT 581 Query: 588 ASFEATQRETIRMEALLKGRPQIDHYVSFVGVGAPRFYLPLDQQLASANFAQFVVTAKSV 647 + +A + + +E +K P++ +G A P+ +A FV+ Sbjct: 582 SLTQAIEMQK-ELERNIKLFPEVSRVFGKLGT-AEIATDPMPPNVADT----FVILKPQS 635 Query: 648 E------DREALARALEEPLRK------QFSGA-RTRLTRLENGPPVGFPVQFRISGEQI 694 E + L A++E + K +F+ + R L +G V V ++ G+ + Sbjct: 636 EWPEPKRSKAELVTAMQEAVSKVPGNNYEFTQPIQMRFNELISG--VRSDVAVKVFGDDM 693 Query: 695 PKVRAIAEQVAAELRKESRATNIQFDWDEPAQRSVSFEIDQKRAAELGLSSQQISNFLAM 754 + A AEQ++ L S A +++ + ++ +ID+++ A LG++ + L++ Sbjct: 694 DAMNATAEQISGVLSGISGAADVKVE-QTTGLPMLTVKIDREKVARLGVNVGDVQEALSI 752 Query: 755 QLSGFTVTQYRERDKLISVDLRAPRSERVD-------PARLATL--SMPTTHGPVPLATL 805 + G E DK + +R P S R D P RL TL + T G L + Sbjct: 753 AVGGREAGMLFEGDKRFDILVRLPESVRNDIETIKKIPIRLPTLDGTQSGTSGYTQLGDV 812 Query: 806 GRFHDTLEYGVIWERDRQPTITVLADVRPGVQGIDVTNAVNQKLDALRSELPVGYRINVG 865 F I + + + V ++VR G VT A QK+ ++ ++P GY I+ G Sbjct: 813 ATFTLAPGPNQISRENGKRLVIVTSNVRGRDIGSFVTEA-QQKVQSI-VKVPTGYWISWG 870 Query: 866 GPVEENAKAQSSISAQMPLMVIAVLLLLMVQLQSFGRTLMVVMTAPLGLIGVVAALLLFG 925 G E+ A + +PL ++ V LLL + L+V P L G +AAL L Sbjct: 871 GTFEQLQSATDRLKIVVPLALLLVFLLLFAMFGNVKDGLLVFTGVPFALTGGIAALWLRD 930 Query: 926 QPFGFVAMLGTIAMLGIIMRNSVILVDQIEQDIAAGRGRFDAIVGATVRRFRPITLTAAA 985 P A +G IA+ G+ + N ++++ I GR +AI + R RP+ +TA Sbjct: 931 IPLSISAGVGFIALSGVAVLNGLVMISFIRSLREEGRTLDEAIHEGALTRLRPVLMTALV 990 Query: 986 AVLALIPLLRSNFFG-----PMATALMGGITIATILTLFYLPALYALCYRVKPDETHHRD 1040 A L +P+ + G P+AT ++GGI +T+LTL LP LY + ++ DE H RD Sbjct: 991 ASLGFVPMALAMGTGAEVQRPLATVVIGGILSSTLLTLLVLPLLYQMAHQRDEDEPHARD 1050 Query: 1041 AVAQG 1045 +G Sbjct: 1051 TENRG 1055 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.323 0.137 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,761,237 Number of extensions: 68976 Number of successful extensions: 315 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 243 Number of HSP's successfully gapped: 15 Length of query: 1047 Length of database: 1,000,347 Length adjustment: 91 Effective length of query: 956 Effective length of database: 700,502 Effective search space: 669679912 Effective search space used: 669679912 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 134 (56.2 bits)