BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0252.p
         (395 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093331|ref|YP_001098406.1| hypothetical protein HEAR0041 [...    75   6e-15
gi|134094274|ref|YP_001099349.1| hypothetical protein HEAR1042 [...    63   2e-11

>gi|134093331|ref|YP_001098406.1| hypothetical protein HEAR0041
           [Herminiimonas arsenicoxydans]
          Length = 383

 Score = 75.1 bits (183), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 102/377 (27%), Positives = 164/377 (43%), Gaps = 36/377 (9%)

Query: 32  VPLALLTVSFALLLSACSKPAPVAEAPRE------VVVLQAQERGGSLPLQLPAEVQSRY 85
           + L  L V  A++++  S  +  A+   E      + V  AQ     LP++L A   +  
Sbjct: 11  IALIALFVLAAIIIALASGKSGTAKKKDETGPKPALTVTTAQPAQAQLPIKLSA---NGS 67

Query: 86  VTSLSFRVAG------QLVERRVHLGDVVRRGQVLARLDPADADQNAVSARAELASARQH 139
           +T+    + G      QL + RV++GDVVRRGQVLA    A    +   ARA +  A  +
Sbjct: 68  ITAWQEAIIGSESNGLQLTDVRVNVGDVVRRGQVLATFSSASTKADLAQARASVMEAEAN 127

Query: 140 LEAAEKQLQRDTEQAREQLISTQQLEQSQDAHAAALSQFKAAQARAAVAGNQRDYTTLVA 199
              A+   +R         +STQQ+ Q       A ++  AA+A   V   +   T ++A
Sbjct: 128 AADAKNNAERARTLENTGALSTQQINQYLTTEQTARAKAAAAKAMLTVQEVRLAQTQVLA 187

Query: 200 QHDGVISAEQANTGDVLSAGQPVYALAWSGAMDVVTDVADRQLASLQPGAAATVTLAALP 259
             +G+ISA  A  G V+ AG  ++ L   G ++   +V   +L  L  G  A +T  A  
Sbjct: 188 SDNGIISARNATVGAVVGAGTELFRLIRQGRLEWRAEVTSAELGRLATGTPALIT--AAN 245

Query: 260 GKHFQARVREISPAADPQSRTYRVKLTLEQPEPG---VRLGMIGEVAITPHSDANAGQVM 316
           G   + +VR I+P  D Q+R+  V + L         VR GM      T   D      +
Sbjct: 246 GTQVKGKVRMIAPTVDAQNRSALVYVDLLPAAANVAPVRAGMFA----TGEFDLGMSTAV 301

Query: 317 LLPATALFHQGGKPAVWIVGVEGK---LELRPVIIAAYGER---SIALSQGVTANDKVVV 370
            +P  A+  + G   V+ +  + +   L++ P      G R    I + +G+  +  +V 
Sbjct: 302 TVPQQAIVIRDGFSYVFRLNADHRVTQLKIEP------GRRLQDRIEVLKGIAPDAVLVA 355

Query: 371 QGVHTLTVGEKVKPVAP 387
            G   L  G+ VK V P
Sbjct: 356 SGAGFLNDGDLVKVVTP 372


>gi|134094274|ref|YP_001099349.1| hypothetical protein HEAR1042
           [Herminiimonas arsenicoxydans]
          Length = 382

 Score = 63.2 bits (152), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 140/308 (45%), Gaps = 15/308 (4%)

Query: 85  YVTSLS---FRVAGQLVERRVHL--GDVVRRGQVLARLDPADADQNAVSARAELASARQH 139
           YVT+++    R   Q + R +H+  G  V+ GQ+L  LD      N   A+AELA+ +  
Sbjct: 60  YVTAINTVDVRPKVQNIVRTIHVREGQFVKAGQLLFTLDERSDQSNVAKAQAELAAGQSD 119

Query: 140 LEAAEKQLQRDTEQAREQLISTQQLEQSQDAHAAALSQFKAAQARAAVAGNQRDYTTLVA 199
           L  AE  L+R+ +      +S   ++ +++  AA  +  KA +A A  +        + A
Sbjct: 120 LADAELALKRNEDLLSRNFVSQAVVDTARNKVAALRNTSKANRAIAESSNITLSDNRIAA 179

Query: 200 QHDGVISAEQANTGDVLS-AGQPVYALAWSGAMDVVTDVADRQLASLQ---PGAAATVTL 255
              G I     + G +   +G P+  ++    + V   + +R+LA++    P   A VT 
Sbjct: 180 SISGRIGIISVHPGSLAQPSGDPMVTISQLDPIAVSFTLPERELANITATYPQGNAPVT- 238

Query: 256 AALPGK-HFQARVREISPAADPQSRTYRVKLTLEQPEPGVRLGMIGEVAITPHSDANAGQ 314
           A LPG+     ++  I  AAD QS T R+K   +     +  G    V++      N   
Sbjct: 239 ARLPGQPEMTGKLIFIDNAADTQSGTIRMKAQFDNAAQKLWPGSFVNVSLVSR---NVSH 295

Query: 315 VMLLPATALFHQGGKPAVWIVGVEGKLELRPVIIAAYGERSIALSQGVTANDKVVVQGVH 374
            +L+PA A+        +++V  +  ++ + V + A  E   A+  G+ A  +VVV+G  
Sbjct: 296 AVLVPAQAVVTGPIDKFIYVVQPDATVKEQKVDVVAIEEGQAAVI-GLDAGARVVVEGTQ 354

Query: 375 TLTVGEKV 382
            L  G K+
Sbjct: 355 NLRPGSKI 362


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.130    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 617,495
Number of extensions: 23292
Number of successful extensions: 119
Number of sequences better than 1.0e-08: 10
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 10
Length of query: 395
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 311
Effective length of database: 723,567
Effective search space: 225029337
Effective search space used: 225029337
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)