BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0245.p (382 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094024|ref|YP_001099099.1| putative GGDEF family protein [... 113 1e-26 gi|134094936|ref|YP_001100011.1| hypothetical protein HEAR1729 [... 108 4e-25 gi|134096466|ref|YP_001101541.1| putative signal peptide [Hermin... 100 2e-22 gi|134094477|ref|YP_001099552.1| putative signal peptide [Hermin... 99 3e-22 gi|134093674|ref|YP_001098749.1| hypothetical protein HEAR0398 [... 94 1e-20 >gi|134094024|ref|YP_001099099.1| putative GGDEF family protein [Herminiimonas arsenicoxydans] Length = 300 Score = 113 bits (283), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 78/249 (31%), Positives = 124/249 (49%), Gaps = 7/249 (2%) Query: 133 SSLLRPHGAS---LSVGAAQLRHVLLVHGLFYVAKAVSALALGAWVDLAAFGGTIIQVS- 188 S L++P A+ + A LLV K V LA D F G I +S Sbjct: 51 SDLVKPEKANWFLEQIARALESRKLLVEEYELSNKDVKGLADDGPKDPIWFEGRIQALSF 110 Query: 189 LIEGSMAVMLIALSMTGTERQRREERIGQLAARDPLTGLLNRRAL-HARAPALLAQASAQ 247 L++ V+ +A +++ ER E+R+ +L+ D LTGL NRR L H + A Sbjct: 111 LVDDEEVVLWVASNIS--ERHILEDRLRELSDTDQLTGLFNRRKLEHDLTLHYASSARYS 168 Query: 248 HPTALLLIDIDNFKQVNDLHGHAAGDKLLEALSTLLRESLPEHALAARLGGDEFVILLQD 307 PT++ + D+DNFK++ND GH AGD++++A++ + R ++ + A R GGDEFV+ L Sbjct: 169 VPTSIFMFDLDNFKKINDTKGHHAGDEIIQAVANICRSAIRKTDTAYRFGGDEFVVALPS 228 Query: 308 VRAEELMRSLEELRQAFSLMARNMFATPDVVSLSTGASLVEVPPLDLDSVIAITDAALYE 367 E+ M+ + L F VV++S G +++ + + D ALYE Sbjct: 229 TGREQAMQFAKRLHDRFRKELSRFSVEGTVVTVSIGVTIITPEDRSYEDTLKRADRALYE 288 Query: 368 AKRKGRDRV 376 K G+DR+ Sbjct: 289 VKSMGKDRI 297 >gi|134094936|ref|YP_001100011.1| hypothetical protein HEAR1729 [Herminiimonas arsenicoxydans] Length = 709 Score = 108 bits (271), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 70/176 (39%), Positives = 98/176 (55%), Gaps = 10/176 (5%) Query: 208 RQRREER---IGQLAARDPLTGLLNRRALHARAPALLAQASAQHPT-ALLLIDIDNFKQV 263 +Q+ +E+ I A+ D LTGL+NRR + L QH T +L +D+D FK V Sbjct: 264 KQKEQEKQIEISYQASHDELTGLINRREFERCLQSALHDIRTQHGTHTILYMDLDQFKIV 323 Query: 264 NDLHGHAAGDKLLEALSTLLRESLPEHALAARLGGDEFVILLQDVRAEELMRSLEELRQA 323 ND GH AGD LL+ L+ +L+E L ++ + ARLGGDEF +LL++ AE + E LRQ Sbjct: 324 NDTCGHHAGDILLQQLTRVLKEKLRQNDILARLGGDEFGVLLRNCPAEPALNVAESLRQT 383 Query: 324 FSLMARNMFATPDV---VSLSTGASLVEVPPLDLDSVIAITDAALYEAKRKGRDRV 376 S FA D V +S G L L+ +++I D A Y AK KGR+R+ Sbjct: 384 ASEFR---FAWNDKLFSVGVSIGLLTFSDDELSLNEILSIVDGACYLAKEKGRNRI 436 >gi|134096466|ref|YP_001101541.1| putative signal peptide [Herminiimonas arsenicoxydans] Length = 492 Score = 100 bits (248), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 62/175 (35%), Positives = 101/175 (57%), Gaps = 6/175 (3%) Query: 209 QRREERIGQLAARDPLTGLLNRRALH-ARAPALLAQASAQHPTALLLIDIDNFKQVNDLH 267 R + R+ Q+A D LTGLLNR+A A+L + P + +L DID FK VND H Sbjct: 313 NRYQRRLEQIAGTDTLTGLLNRQAFEIVFQQAILDSERRRIPLSAILFDIDFFKMVNDNH 372 Query: 268 GHAAGDKLLEALSTLLRESLPEHALAARLGGDEFVILLQDVRAEELMRSLEELRQAFSLM 327 GH AGD++L++++ + + ++ E + R GG+EF++LL+D E+ E++R S++ Sbjct: 373 GHLAGDRILQSIAAITKNAVRESDIVTRWGGEEFLVLLKDCPLEQATALAEKIR---SMI 429 Query: 328 ARNMFATP-DVVSLSTGASLVEVPPLDL-DSVIAITDAALYEAKRKGRDRVVMTR 380 A + F P + L+ + E + S D ALY+AK +GR+RV+++R Sbjct: 430 AGHDFELPASALHLTVSLGVAEYAYRETWLSFFGRADTALYQAKSEGRNRVIVSR 484 >gi|134094477|ref|YP_001099552.1| putative signal peptide [Herminiimonas arsenicoxydans] Length = 891 Score = 99.4 bits (246), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 67/173 (38%), Positives = 93/173 (53%), Gaps = 11/173 (6%) Query: 214 RIGQLAARDPLTGLLNRRALHAR---APALLAQASAQHPTALLLIDIDNFKQVNDLHGHA 270 ++ AA DPLTGL NRR R A LA+ S QH ALL +D+D FK VND GH+ Sbjct: 455 QLSHQAAHDPLTGLFNRREFERRLELAIDTLARQSKQH--ALLYLDLDQFKIVNDTCGHS 512 Query: 271 AGDKLLEALSTLLRESLPEHALAARLGGDEFVILLQDVRAEELMRSLEELRQA---FSLM 327 AGD+LL ++ LL+ + + ARLGGDEF L++ E +R E+LRQ F + Sbjct: 513 AGDELLRQITALLQPLVRDSDTLARLGGDEFGAFLENCSPESAIRIAEKLRQTICDFHFV 572 Query: 328 ARNMFATPDVVSLSTGASLVEVPPLDLDSVIAITDAALYEAKRKGRDRVVMTR 380 ++ + +S G L L +++ D A Y AK GR+RV + R Sbjct: 573 WQDKIFP---IGVSIGLVNFNTNALSLPDLLSAADTACYVAKDAGRNRVHIYR 622 >gi|134093674|ref|YP_001098749.1| hypothetical protein HEAR0398 [Herminiimonas arsenicoxydans] Length = 475 Score = 93.6 bits (231), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 66/210 (31%), Positives = 106/210 (50%), Gaps = 11/210 (5%) Query: 178 AAFGGTIIQVSLIEG--SMAVMLIALSMTGTERQRREERIGQLAARDPLTGLLNRRALHA 235 A F ++Q ++ A LI ++ G +R+ E+ RD LTG NRR Sbjct: 270 ALFDMCVLQTDQVDALLQEAKELITIANLGRQRELEEK-----THRDVLTGAHNRRYFDE 324 Query: 236 RAPALLAQASAQH-PTALLLIDIDNFKQVNDLHGHAAGDKLLEALSTLLRESLPEHALAA 294 A AS Q P ++ +DID+FKQVND +GHAAGDK L ALS ++ + + Sbjct: 325 AFKHEFAVASRQGWPLSVAFLDIDHFKQVNDTYGHAAGDKALIALSRIIATQIRGSDIFV 384 Query: 295 RLGGDEFVILLQDVRAEELMRSLEELRQAFSLMARNMFATPDVVSLSTGASL---VEVPP 351 R GG+EFV+L AEE + L +RQA + +++S G + ++ Sbjct: 385 RYGGEEFVLLFPGTVAEEALIVLNRIRQAVASYCHTYDTATFHLTISAGLAFHMDEDMKH 444 Query: 352 LDLDSVIAITDAALYEAKRKGRDRVVMTRS 381 + ++ D ALY AK+ GR++++ +++ Sbjct: 445 ETAEGLLRTADNALYTAKQNGRNQIIKSKA 474 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.325 0.136 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 552,674 Number of extensions: 18944 Number of successful extensions: 175 Number of sequences better than 1.0e-08: 31 Number of HSP's gapped: 140 Number of HSP's successfully gapped: 31 Length of query: 382 Length of database: 1,000,347 Length adjustment: 83 Effective length of query: 299 Effective length of database: 726,862 Effective search space: 217331738 Effective search space used: 217331738 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 129 (54.3 bits)